RetrogeneDB ID: retro_mputfur_24

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896948.1:3022732..3024484(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019928
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000004592
• Aliases: None
• Description: None

Sequence

>retro_mputfur_24
ATGCCATGTCAGGCACTTCGCAGAATTGGTCCAAAGCTGGTACGCAGACGAATGCTGGAAGAAGATGTGAATGAGATGGC
CCCTGCCAGAAGACGGACCACTCTGGATTTAGTGGCCCTGGGTGTGGGCTGCACAGTGGGAGTAGGTGTGTTTGTCCTGG
CTGGGGAGGTAGCTAGAGATGTAACAGGACCATCCATTGTGGTCTGCTTGTTGGGAGCCAGCCTGTCTTCTGGGTTGGCT
GGGCTGTGCTATGCAGAGTTTGGTGTCCAGGTTCCCTATGCTGGCTCTTCATATCTCTACACCTATGTCACTATGGGTGA
AATCTGGGCTTTCATCACTGGCTGGAACCTCATTGTCTTCTTTGTTGCTCATACAGCCACTGTGGCTCGGGCTTGGACCT
TAGCTTTTGACAATCTGCTTGGGAACCAGATCTCTCAGACCCTGCATGAGAGCATCTCACCAAATGTTCCCCAGCACCTG
GGAGAAATTCTAGGCTTCATTGTTGTGGGCCTTATGTTGTTGCTGATGGAATTGCTGACTCTGAGGAATAGGTGGATTTT
CCCGGTTTCCAAAGTGGTCACGTTGGTGAAACTTTTGGCTCTCAGTTTTGTCATCATCTCAGGCTTCATTAAGGGAGACC
TGCACAACTGGAAGCTCACAGAAGAGGACTATGTAAAGGCTGGACTCAATGACACCTCTAGCTTGGGCCCTCTGGGCTCT
GGAGGATTTGTGCCTTTTGGGTTCAGGGGGATTCTCCGTGGAGTAGCTACCTGTTTCTATGCATTTATTGGTTTTAGCAT
TATTATTACAAGAGTGGAAGAAGCCCAGAATCCTGAGCGTTCCATCCCCATGGGCATTGTGGTTTCACTGCTCATCTGCT
TTTTGTTGTATTTTGGTGTCGCTGCAGCACTAACACTTATGGTTCCTTACTACCAGCTTCGACCTGGGAGCACATTGCCA
GAGATATTTCTCCATATTGGCTGGACAACTGCCTACTATGCTATAGCTTTTGTATTCCTCTGTAGTCTTTCTGTCAGCAT
CTTTGGCTTTATGTTCCCCATACGTAATCTGATATACATGATGGCACAGGATGGCCTCCTGTTCCCTGTCCTTGCCAGAA
TCCAGACCAGCACATACATGCCCAATGTGTCCACTGTAATCTTGGGCATCATCGTAGGAATCATGGCATTCTTCCTTGGA
CTCACTGATCTTCTGGATCTCATGTCAGTTGGGGCCCTGCTAGCTTACTCCCTGATGGCTCTTTGTGTTCTCATCCTCAG
GTACCAGCCTGAGAGGAGGAATGGGGTAAAAAAAGCACAGGAGCAGGAAGAGAATGGACAGGCAGCAGAGAAACTGACAC
TACAAGAATTGTTTTTTCCAGGGAGCCCCACCCCCACTCCACTATCTGGCTGGGTTGTCATTGTTTGCTCCTCACTACTT
GTTCTGCTGCTGGCTCTCCTCTGCCTGGTGCTGGCCCACTGGCCAGGTCTGCTTTCTGGAGATGCAGGGGCGATCACAGT
GGTTGTGCTGCTCCTGGTGCTCATTACTGGGATCACTGGGGTCATCTGGAGACAGCCACAGAGTTCCACTCCCCTTCACT
TTAAAGTCCCTGCTCTGCCTCTCCTCCCACTCCTGAGCATCTCTGTGAATGTTTATCTTATGATGCAGATGTCAGCTGGC
ACCTGGGCCCGATTTGGTGTCTGGATGCTAACTGGGTTTACTATATACTTTGGCTACGGGATCCAGCACAGC

Alignment

ORF - retro_mputfur_24 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.01 %
• Parental protein coverage: 94.65 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RTLRRVSQKLVRRRALEPGMAETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVA
          ..LRR...KLVRRR.LE....E...AR...TLDLVALGVG.T.G.GV.VLAGEVA.D..GPSIV.C.L.A
Retrocopy QALRRIGPKLVRRRMLEEDVNEMAPARRRTTLDLVALGVGCTVGVGVFVLAGEVARDVTGPSIVVCLLGA

Parental  ALSSVLAGLCYAEFGARVPRSGSAYLYSYVTVGELWAFTTGWNLILSYVIGTASVARAWSSAFDNLIGNH
          .LSS.LAGLCYAEFG..VP..GS.YLY.YVT.GE.WAF.TGWNLI...V..TA.VARAW..AFDNL.GN.
Retrocopy SLSSGLAGLCYAEFGVQVPYAGSSYLYTYVTMGEIWAFITGWNLIVFFVAHTATVARAWTLAFDNLLGNQ

Parental  ISQTLQGSISLHVPHVLAEYPDFFALGLVLLLTGLLALGASESALVTKVFTVVNLLVLGFVIISGFIKGD
          ISQTL..SIS..VP..L.E...F...GL.LLL..LL.L.......V.KV.T.V.LL.L.FVIISGFIKGD
Retrocopy ISQTLHESISPNVPQHLGEILGFIVVGLMLLLMELLTLRNRWIFPVSKVVTLVKLLALSFVIISGFIKGD

Parental  LHNWKLTEEDYRLTIAGLNDTNSLGPLGSGGFVPFGFEGILRGAATCFYAFVGFDCIATTGEEAQNPQRS
          LHNWKLTEEDY....AGLNDT.SLGPLGSGGFVPFGF.GILRG.ATCFYAF.GF..I.T..EEAQNP.RS
Retrocopy LHNWKLTEEDY--VKAGLNDTSSLGPLGSGGFVPFGFRGILRGVATCFYAFIGFSIIITRVEEAQNPERS

Parental  IPVGIVISLFVCFLAYFGVSSALTLMIPYYQLQPESPLPEAFLYTGWAPARYVVAIGSLCALSTSLLGSM
          IP.GIV.SL..CFL.YFGV..ALTLM.PYYQL.P.S.LPE.FL..GW..A.Y..A...LC.LS.S..G.M
Retrocopy IPMGIVVSLLICFLLYFGVAAALTLMVPYYQLRPGSTLPEIFLHIGWTTAYYAIAFVFLCSLSVSIFGFM

Parental  FPMPRVIYAMAEDGLLFRVLARVHTGTHTPIVATVVSGIIAAFMAFLFELTDLVDLMSIGTLLAYSLVAV
          FP....IY.MA.DGLLF.VLAR..T.T..P.V.TV..GII...MAF...LTDL.DLMS.G.LLAYSL.A.
Retrocopy FPIRNLIYMMAQDGLLFPVLARIQTSTYMPNVSTVILGIIVGIMAFFLGLTDLLDLMSVGALLAYSLMAL

Parental  CVLILRYQPELRNDEDEVELQEEKLPEAEKLTLQGLFCPLNPIPTPLSGQVVYVCSSLLALLLTLLCLVL
          CVLILRYQPE.RN.......QEE....AEKLTLQ.LF.P..P.PTPLSG.VV.VCSSLL.LLL.LLCLVL
Retrocopy CVLILRYQPERRNGVKKAQEQEENGQAAEKLTLQELFFPGSPTPTPLSGWVVIVCSSLLVLLLALLCLVL

Parental  AQWPIPLLSGDPVWTAVVVLLLMLITGITGVIWRQPQSPTPLHFKVPALPLLPLVSIFVNVYLMMQMTAG
          A.WP..LLSGD.....VVVLLL.LITGITGVIWRQPQS.TPLHFKVPALPLLPL.SI.VNVYLMMQM.AG
Retrocopy AHWP-GLLSGDAGAITVVVLLLVLITGITGVIWRQPQSSTPLHFKVPALPLLPLLSISVNVYLMMQMSAG

Parental  TWARFGVWMLIGFAIYFGYGIQHS
          TWARFGVWML.GF.IYFGYGIQHS
Retrocopy TWARFGVWMLTGFTIYFGYGIQHS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_24 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_24 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000016908	2 retrocopies	retro_cfam_130, retro_cfam_156,
Myotis lucifugus	ENSMLUG00000023615	1 retrocopy	retro_mluc_2621,
Mustela putorius furo	ENSMPUG00000004592	1 retrocopy	retro_mputfur_24 ,