RetrogeneDB ID: retro_mputfur_166

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896962.1:7788673..7789252(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019082
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000002350
• Aliases: None
• Description: None

Sequence

>retro_mputfur_166
TGCCGTGCTCTGCGGCCCTCGAGGAGGGTACTTGTCCCTCCGCTCTGCCGCGCCTTCGCGGGGTCCGGCTGTCAGCTCGC
CCCAGAGCGCGGCGCGGAGCGCAGGGATACTGCGTCCGGCCCGGTCTCAGGATTCTGCCCTCCAAGAAAATCTTGCCATG
ATTGGATAGGACCCCCAGATAAACATTCAAACCTTCGATCCGTTCACTTCTACGTCCCCAAAAACGAATCACCGTTGGAA
CAGAAGCTAAGACAATTAAGACAAGAAACACAAGAATGGAACCAACAGTTCTGGGCAAACCAGAATTTGACATTTCGTAA
GGAGAAAGAAGAATTTATTCGCTCGAGACTGAAAGCTAGAGGCCTGGAACCCAGAGCTGGATCAGGCCAAAAAGCAACAT
TAGATGCAGAAGAAATGGCTGACTTCTACAAGGAATTTTTAAGTAAAAATTTTCTGAAGCACATGTATTATAACAGAGAC
TGGTACCAGCGTAATTTTGCCATCACCTTCTGCATGGGAAAAGTGGCCCTGGAGAGGGTTTGGAACAAGCTTAGGCCAAA
ACCAAAGGAGACAGCACGG

Alignment

ORF - retro_mputfur_166 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.37 %
• Parental protein coverage: 93.14 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ALRPSRRVLVPPLCRAFAGSGCQLAPERGAERRDTASGRVSGFCPPRKSCHDWIGPPDKHSNLRPVHFYV
          ALRPSRRVLVPPLCRAFAGSGCQLAPERGAERRDTASG.VSGFCPPRKSCHDWIGPPDKHSNLR.VHFYV
Retrocopy ALRPSRRVLVPPLCRAFAGSGCQLAPERGAERRDTASGPVSGFCPPRKSCHDWIGPPDKHSNLRSVHFYV

Parental  PKNESPLEQKLRQLRQETQEWNQQFWAKQNLTFRKEKEEFIRSRLKARGLDPRAGSGQKATLDAEEMADF
          PKNESPLEQKLRQLRQETQEWNQQFWA.QNLTFRKEKEEFIRSRLKARGL.PRAGSGQKATLDAEEMADF
Retrocopy PKNESPLEQKLRQLRQETQEWNQQFWANQNLTFRKEKEEFIRSRLKARGLEPRAGSGQKATLDAEEMADF

Parental  YKEFLSKNFLKHMYYNRDWYQRNFAITFCMGRVALERVWNKLRPKPKETA
          YKEFLSKNFLKHMYYNRDWYQRNFAITFCMG.VALERVWNKLRPKPKETA
Retrocopy YKEFLSKNFLKHMYYNRDWYQRNFAITFCMGKVALERVWNKLRPKPKETA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_166 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_166 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000030884	2 retrocopies	retro_cfam_1514, retro_cfam_396,
Dasypus novemcinctus	ENSDNOG00000019553	5 retrocopies	retro_dnov_1003, retro_dnov_2304, retro_dnov_2391, retro_dnov_441, retro_dnov_777,
Erinaceus europaeus	ENSEEUG00000011728	1 retrocopy	retro_eeur_107,
Felis catus	ENSFCAG00000027939	3 retrocopies	retro_fcat_482, retro_fcat_549, retro_fcat_649,
Microcebus murinus	ENSMICG00000009792	1 retrocopy	retro_mmur_744,
Mustela putorius furo	ENSMPUG00000002350	2 retrocopies	retro_mputfur_1406, retro_mputfur_166 ,
Otolemur garnettii	ENSOGAG00000015416	1 retrocopy	retro_ogar_1394,