RetrogeneDB ID: retro_mputfur_1596

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897311.1:184914..185639(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CNOT7
• Ensembl ID: ENSMPUG00000017972
• Aliases: None
• Description: CCR4-NOT transcription complex, subunit 7 [Source:HGNC Symbol;Acc:14101]

Sequence

>retro_mputfur_1596
ATACCAGCAGCAACTGTGGATCATAACTAAAGAATTTCTGTAGTTTGAGCTTGCAACCTGGACAAAGAGATAAAGAAAAT
TCATTCAGTTATCTGACAATATAATTATGTTCCTATGGGCACAGAGTTTCCAGATGTGGTTGCAAGACCTATTGGAGAAT
TCAGGAACAATGCTGGCTATTAATACCAACTATTGTGATGCAGTGTAGACTAACTAAAGATAATTTAGCTAGGACTGACA
TTTATGAATGAGCAAGAAGACTAACCTCCAGGAACTTCAACTTTGCAGTTTAATTTTAAATTTAATTTGACAGAGGACAT
GTATGCCCAGAACTCTATAGAGCTACTAACAACATCTGGAATCTGGTTTAAAAAACCTGAGAAGGAAGGAATTGATACCC
AGTACTTTGCAGGACTTCTTATGCCCTCAGGAGTGATCCTCTGCAAAGAGGGCAAATGGTTATTTCACAGTGACTATGAC
TTTGGCTATTTAATCAAAATCCTGACAACCTCTAACTTCCCTGAAGAAGAACATGACTTATTTGAGATCCTTTGATTATT
TTTTCCTGTCATTTAGATGTGAATTACCTCATGAAGTGCTACAAAAATTTCAAAAGTGGTTTAAAAGAAGTTGCTGAACA
GTTAGAGCTGGAACCGATAGGACCACATCAAGTAGGATCTGATTCATTGCTCACAAGAATGGCTTTTTTCAACATGAGAG
AAGTA

Alignment

ORF - retro_mputfur_1596 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.33 %
• Parental protein coverage: 85.61 %
• Number of stop codons detected: 9
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVD
          .PAATVDH..RI..V.ACNLD.E.KKI..VI..YNYV.M.TEFP.VVARPIGEFR.NA.Y.YQLL.C.VD
Retrocopy IPAATVDHN*RISVV*ACNLDKEIKKIHSVI*QYNYVPMGTEFPDVVARPIGEFRNNAGY*YQLL*CSVD

Parental  LLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELL
          .LKII.LGLTFMNEQ...PPGTST.QFNFKFNLTEDMYAQ.SIELLTTSGI.FKK.E.EGI.TQYFA.LL
Retrocopy *LKII*LGLTFMNEQED*PPGTSTLQFNFKFNLTEDMYAQNSIELLTTSGIWFKKPEKEGIDTQYFAGLL

Parental  MTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVI-YDVKYLMKSCKNLKGGL
          M.SGV.LC...KWL.FHS.YDFGYLIKILT.SN.PEEE.D.FEIL.LFFPVI..DV.YLMK..KN.K.GL
Retrocopy MPSGVILCKEGKWL-FHSDYDFGYLIKILTTSNFPEEEHDLFEIL*LFFPVI<LDVNYLMKCYKNFKSGL

Parental  QEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREM
          .EVAEQLELE.IGP.HQ.GSDSLLT.MAFF.MRE.
Retrocopy KEVAEQLELEPIGP-HQVGSDSLLTRMAFFNMREV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1596 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1596 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000677	4 retrocopies	retro_chof_1431, retro_chof_1581, retro_chof_822, retro_chof_963,
Callithrix jacchus	ENSCJAG00000011795	1 retrocopy	retro_cjac_720,
Felis catus	ENSFCAG00000000591	1 retrocopy	retro_fcat_1889,
Homo sapiens	ENSG00000198791	2 retrocopies	retro_hsap_211, retro_hsap_4851,
Macaca mulatta	ENSMMUG00000001873	1 retrocopy	retro_mmul_2592,
Mustela putorius furo	ENSMPUG00000017972	1 retrocopy	retro_mputfur_1596 ,
Nomascus leucogenys	ENSNLEG00000002489	2 retrocopies	retro_nleu_1860, retro_nleu_2373,
Oryctolagus cuniculus	ENSOCUG00000014589	1 retrocopy	retro_ocun_118,
Otolemur garnettii	ENSOGAG00000006324	2 retrocopies	retro_ogar_1883, retro_ogar_505,
Pongo abelii	ENSPPYG00000018385	2 retrocopies	retro_pabe_3771, retro_pabe_428,
Sarcophilus harrisii	ENSSHAG00000011828	2 retrocopies	retro_shar_103, retro_shar_631,
Ictidomys tridecemlineatus	ENSSTOG00000009175	2 retrocopies	retro_itri_1729, retro_itri_1730,