RetrogeneDB ID: retro_mputfur_14

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896900.1:7899104..7900028(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019632
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000014606
• Aliases: None
• Description: None

Sequence

>retro_mputfur_14
ATGGAATTGAAACAGGAAATGGCTGGAAATCTTTTGAAGACATCATCTTTGACTGTAAGGAAAAAATTACTGCATCAGAT
GGGAGTATCACTTTATAATACATCTCATGGGTTCCATGAGGAAGAATTAAAAAAAAAACTTCAGCAGTTTCCTGGTGGAT
CCGTTGACCTTCAGAAGGAAGACAGTGGCATTGGCATTCTTACTCTGAATAATCCAAGTAAAATGAATGCCTTCTCAGGT
GTTATGATGCTACAACTTCTGGAAAGAGTGATTGAATTGGAAAATTGGACAGAGGGGAAAGGTCTCATTGTCCGTGGGGC
AGGAAATACTTTCTCCTCAGGATCTGATTTGAATGCTGTGAAAGCATTAGCAACTCCAGAGGATGGACTGGTCTTATGTA
TGTTCATGCAGAACACGTTAACAAGATTGATGAGACTCCCTTTAATAAGTGTTGCGCTGATTCAAGGTCGGGCATTGGGT
GGAGGAGCAGAAGTTACTACAGCATGTGATTTCAGATTAATGACTGCAGAGAGTGAGATCAGATTTGTCCACAAAGACAT
GGGTATAATACCAAGCTGGGGCGGTGCTACCCGACTAAGTAAAATCATTGGCAGTAGGCAGGCTCTCAAAGTGTTAAGCG
GGGCTCTCAAATTGGATTCAAAAAAAGCTCTAGACATAGGAATGGCTGAAGAGATCTTGCAGTTTACAGACGAAACTGAA
TGTCTAAGGGAGGCACGAGAATGGCTAACACAGTTTACCAGAGGGCCACCGGAAGTAATTAGAGCTTTGAAAACGTGTGT
TTCTTCAGGCAAAGAGCTTTGTTTCGAGGAGGCATTACAGATTGAAAAAGACCTAGTAGGAAGAGTTTGGGGTGGACCTG
CAAATAAAGAGGCTATTGCCAGGAAAGGTAAATTTAATAAATAG

Alignment

ORF - retro_mputfur_14 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.34 %
• Parental protein coverage: 98.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EMAGNLLKTSSLTVRKKLLHQMGVSLYNTSHGFHEEELKKKLQQFPGGSVDLQKEDSGIGILTLNNPSKM
          EMAGNLLKTSSLTVRKKLLHQMGVSLYNTSHGFHEEELKKKLQQFPGGSVDLQKEDSGIGILTLNNPSKM
Retrocopy EMAGNLLKTSSLTVRKKLLHQMGVSLYNTSHGFHEEELKKKLQQFPGGSVDLQKEDSGIGILTLNNPSKM

Parental  NAFSGVMMLQLLERVIELENWTEGKGLIVRGAGNTFSSGSDLNAVKALATPEDGLVLCMFMQNTLTRLMR
          NAFSGVMMLQLLERVIELENWTEGKGLIVRGAGNTFSSGSDLNAVKALATPEDGLVLCMFMQNTLTRLM.
Retrocopy NAFSGVMMLQLLERVIELENWTEGKGLIVRGAGNTFSSGSDLNAVKALATPEDGLVLCMFMQNTLTRLM-

Parental  NRLPLISVALIQGRALGGGAEVTTACDFRLMTAESEIRFVHKDMGIIPSWGGATRLSKIIGSRQALKVLS
          .RLPLISVALIQGRALGGGAEVTTACDFRLMTAESEIRFVHKDMGIIPSWGGATRLSKIIGSRQALKVLS
Retrocopy -RLPLISVALIQGRALGGGAEVTTACDFRLMTAESEIRFVHKDMGIIPSWGGATRLSKIIGSRQALKVLS

Parental  GALKLDSKKALDIGMAEEILQFTDETECLREAREWLTQFTRGPPEVIRALKTCVSSGKELCFEEALQIEK
          GALKLDSKKALDIGMAEEILQFTDETECLREAREWLTQFTRGPPEVIRALKTCVSSGKELCFEEALQIEK
Retrocopy GALKLDSKKALDIGMAEEILQFTDETECLREAREWLTQFTRGPPEVIRALKTCVSSGKELCFEEALQIEK

Parental  DLVGRVWGGPANKEAIARKGKFNK
          DLVGRVWGGPANKEAIARKGKFNK
Retrocopy DLVGRVWGGPANKEAIARKGKFNK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_14 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_14 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000001069	1 retrocopy	retro_cfam_2182,
Cavia porcellus	ENSCPOG00000004786	1 retrocopy	retro_cpor_1303,
Echinops telfairi	ENSETEG00000006454	2 retrocopies	retro_etel_2049, retro_etel_564,
Mustela putorius furo	ENSMPUG00000014606	1 retrocopy	retro_mputfur_14 ,
Sorex araneus	ENSSARG00000011144	2 retrocopies	retro_sara_149, retro_sara_255,