RetrogeneDB ID: | retro_mmus_2751 | ||
Retrocopy location | Organism: | Mouse (Mus musculus) | |
| Coordinates: | 6:76284388..76284925(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | Uxs1 | ||
| Ensembl ID: | ENSMUSG00000057363 | ||
| Aliases: | None | ||
| Description: | UDP-glucuronate decarboxylase 1 [Source:MGI Symbol;Acc:MGI:1915133] |
Retrocopy-Parental alignment summary:
>retro_mmus_2751
ACTGTTTGGGGCAACTTTGTTAACATGAGCTTTCTGCTCAACAGGTCTATCCAGGAAAATGGAGAACTAAAGATCGAAAG
CAAGATTGAAGAGATTGTTGAACCATTAAGAGAGAAAATCAGAGATTTGGAAAAAAGTTTTACCCAGAAATACCCGCCTG
TAAAGTTTTTATCAGAAAAGGACCGGAAAAGGATTTTGATCACTGGAGGTGCAGGCTTTGTGGGCTCCCATCTAACTGAC
AAACTCATGATGGATGGCCATGAGGTGACCGTGGTGGACAACTTCTTCACAGGCAGGAAGAGAAATGTGGAACACTGGAT
TGGCCATGAGAACTTCGAGCTGATTAACCATGATGTGGTCGAGCCGCTCTACATAGAAGTTGACCAGATATATCATCTGG
CATCTCCAGCCTCCCCACCAAACTACATGTACAACCCCATCAAGACACTGAAGACTAATACAATTGGAACACTAAACATG
TTGGGATTGGCAAAGCGCGTGGGTGCCCGTCTGCTCTTGGCCTCCACTTCCGAGGTA
ORF - retro_mmus_2751 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 99.44 % |
| Parental protein coverage: | 70.47 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | SVWGNFVNMSFLLNRSIQENGELKIESKIEEIVEPLREKIRDLEKSFTQKYPPVKFLSEKDRKRILITGG |
| .VWGNFVNMSFLLNRSIQENGELKIESKIEEIVEPLREKIRDLEKSFTQKYPPVKFLSEKDRKRILITGG | |
| Retrocopy | TVWGNFVNMSFLLNRSIQENGELKIESKIEEIVEPLREKIRDLEKSFTQKYPPVKFLSEKDRKRILITGG |
| Parental | AGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPP |
| AGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPP | |
| Retrocopy | AGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPP |
| Parental | NYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV |
| NYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV | |
| Retrocopy | NYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .12 RPM | 29 .04 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 18 .54 RPM |
| SRP007412_heart | 0 .03 RPM | 7 .00 RPM |
| SRP007412_kidney | 0 .06 RPM | 23 .99 RPM |
| SRP007412_liver | 0 .00 RPM | 9 .61 RPM |
| SRP007412_testis | 0 .00 RPM | 18 .52 RPM |
RNA Polymerase II activity near the 5' end of retro_mmus_2751 was not detected
No EST(s) were mapped for retro_mmus_2751 retrocopy.
No TSS is located nearby retro_mmus_2751 retrocopy 5' end.
retro_mmus_2751 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_2751 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Bos taurus | ENSBTAG00000005614 | 1 retrocopy | |
| Mus musculus | ENSMUSG00000057363 | 2 retrocopies |
retro_mmus_1661, retro_mmus_2751 ,
|