RetrogeneDB ID: retro_mmur_884

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_118999:1..891(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANXA7
• Ensembl ID: ENSMICG00000013143
• Aliases: None
• Description: annexin A7 [Source:HGNC Symbol;Acc:545]

Sequence

>retro_mmur_884
AGTCAGCCTGCTTCGATGACTCAGGGCGCCCAAGGAACAGTCAGACCAGCTGCCAACTTCGATGCTATGATAGATGCAGA
AATTCTCCATAAAGCAATGAAGGGTTTTGGGACAGACGAGCAAGCCATTGTGGATGTTGTGGCCAACCGTTCCAAAGATC
AGAGGCAAAAAATTAAAGCAGCTTTTAAGACCATGTATGGCGAGGATTTGATCAAAGATCTCAAATCAGAGTTAAGTGGA
AATATGGAAGAACTAATCCTTGCCCTGTTCACGCCTCCTGCATATTACGATGCCTGGAGTTTACGGAACGCAGTGCAGGA
GCAGGAACTCAGGAACGCGTATTGACTGAGATTTTGTGCACAAGAACAAATCAGGAAATCCGAGAAATCGTCAGAGGTTA
TCAATCAGAATTAGGATGAGACCTTGAAAAGGACAGTAGGTCAGATACATCAGGGCCTTTTGAATGTTTACTTGTATCCA
TGTGCCAGGGAAATCGTGATGACAACCAGAGTGTAAACCACCAAATGGCTCAGGAAGATGCTCAGCGTCTCTATCAAGCT
GGTGAGGGAAGACTAGGGACAGATGAATCTTGCTTTAACATGATCCTTGCCACGAGAAGCTTTCCTCAGCTGAAAGCTAC
CATGGAGGCTTATTCCAGGATGGCTAATTGAGATTTGTTAAGCAGTGTGGGCCGTGAGTTTTCTGGGTACGTTGAAAGTG
GTTTGAAGACCATCTTGCAGTGCGCCCTGAACCGCCCTGCCTTCTTTGCTGAGAGGCTCTACTATGCTATGAAAGGTGCT
GGCACAGATGACTCCACCCTGGTCAGGACTGTGGCCACTCGAAGTGAGATTGATCTTGTGCAGATAAAACAGATGTTTAC
GCAGATGTAT

Alignment

ORF - retro_mmur_884 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.26 %
• Parental protein coverage: 63.87 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SEPAAMSQGTQGTIRAAANFDAMRDAEILRKAMKGFGTDEQAIEDVVANRSNDQRQKIKAAFKTMYGKDL
          S.PA.M.QG.QGT.R.AANFDAM.DAEIL.KAMKGFGTDEQAI.DVVANRS.DQRQKIKAAFKTMYG.DL
Retrocopy SQPASMTQGAQGTVRPAANFDAMIDAEILHKAMKGFGTDEQAIVDVVANRSKDQRQKIKAAFKTMYGEDL

Parental  IKDLKSELSGNMEELILALFMPSPYYDAWSLRNAMQ-GAGTQEHVLIEILCTRTNQDIREIVRCYQSEFG
          IKDLKSELSGNMEELILALF.P..YYDAWSLRNA.Q.GAGTQE.VL.EILCTRTNQ.IREIVR.YQSE.G
Retrocopy IKDLKSELSGNMEELILALFTPPAYYDAWSLRNAVQ<GAGTQERVLTEILCTRTNQEIREIVRGYQSELG

Parental  RDLEKDIRSDTSGHFERLLVSMCQGNRDENQSVNHQMAQEDAQRLYQAGEGRLGTDESCFNRILATRSFP
          .DLEKD.RSDTSG.FE.LLVSMCQGNRD.NQSVNHQMAQEDAQRLYQAGEGRLGTDESCFN.ILATRSFP
Retrocopy *DLEKDSRSDTSGPFECLLVSMCQGNRDDNQSVNHQMAQEDAQRLYQAGEGRLGTDESCFNMILATRSFP

Parental  QLRATMEAYSRMANRDLLSSVGREFSGYVESGLKTILQCALNRPAFFAERLYCSMKGAGTDDSTLVRTAV
          QL.ATMEAYSRMAN.DLLSSVGREFSGYVESGLKTILQCALNRPAFFAERLY..MKGAGTDDSTLVRT..
Retrocopy QLKATMEAYSRMAN*DLLSSVGREFSGYVESGLKTILQCALNRPAFFAERLYYAMKGAGTDDSTLVRTVA

Parental  SRSEIDLVQKKQMFTQMY
          .RSEIDLVQ.KQMFTQMY
Retrocopy TRSEIDLVQIKQMFTQMY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_884 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_884 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000014749	1 retrocopy	retro_cfam_1107,
Callithrix jacchus	ENSCJAG00000001720	3 retrocopies	retro_cjac_1288, retro_cjac_2174, retro_cjac_860,
Microcebus murinus	ENSMICG00000013143	2 retrocopies	retro_mmur_404, retro_mmur_884 ,
Pteropus vampyrus	ENSPVAG00000013001	1 retrocopy	retro_pvam_1365,
Rattus norvegicus	ENSRNOG00000007136	1 retrocopy	retro_rnor_2446,
Ictidomys tridecemlineatus	ENSSTOG00000012433	1 retrocopy	retro_itri_1796,