RetrogeneDB ID: retro_mmur_647

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_4403:690033..690413(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000006451
• Aliases: None
• Description: None

Sequence

>retro_mmur_647
GAGTGTGTGGACATAGAAACCAGTGCTCCCAGCAAGAAGCCATGGTGGACCGTGCCCGAAAACTTTCGTGCTCCAATGGT
ATTTTACTTGGAAGAGGACCAGGAGGAGCTTATCTTTGGGCAGAGTGATACATACCTTCGCTGCATCGAGGTGCACAGCT
ATACCCTCATTCAGCCGGAGAGTTGGTTTACAGCCACAGGCCAGACTCGTGTCATTCTAGTTGGACCATTCAGCGCAACA
CAGTGGCTGTTGCACATGATGTTCCGTGTGATAAGCCAGGACTCCTATCGTCACGCCTGGGGCCTCAAGATGCTGGAGCG
TGTCCGGAGCCAGCCCCTGACCGAGGATGACCTGGAGACCCCATGAGTATGGAGCCGATA

Alignment

ORF - retro_mmur_647 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.59 %
• Parental protein coverage: 54.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QSVDMETRLPSKKPWWTEPENFCAPRVFYLEEDQEELIFGHSDTYLHCIEVHSYTLIQLERWFTARGHTR
          ..VD.ET..PSKKPWWT.PENF.AP.VFYLEEDQEELIFG.SDTYL.CIEVHSYTLIQ.E.WFTA.G.TR
Retrocopy ECVDIETSAPSKKPWWTVPENFRAPMVFYLEEDQEELIFGQSDTYLRCIEVHSYTLIQPESWFTATGQTR

Parental  VIAVGPFRATQWLLHMMSRVISQDSYHHAQGLKMLERVRSQPLTEDDLETP-MSMEPM
          VI.VGPF.ATQWLLHMM.RVISQDSY.HA.GLKMLERVRSQPLTEDDLETP.MSMEP.
Retrocopy VILVGPFSATQWLLHMMFRVISQDSYRHAWGLKMLERVRSQPLTEDDLETP<MSMEPI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_647 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_647 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000009236	4 retrocopies	retro_dord_249, retro_dord_47, retro_dord_607, retro_dord_82,
Microcebus murinus	ENSMICG00000006451	1 retrocopy	retro_mmur_647 ,
Macaca mulatta	ENSMMUG00000018573	1 retrocopy	retro_mmul_84,
Mus musculus	ENSMUSG00000067750	1 retrocopy	retro_mmus_464,
Oryctolagus cuniculus	ENSOCUG00000028154	1 retrocopy	retro_ocun_735,
Otolemur garnettii	ENSOGAG00000006102	1 retrocopy	retro_ogar_2275,