RetrogeneDB ID: retro_mmur_43

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_4817:133269..134124(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000014972
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000005793
• Aliases: None
• Description: None

Sequence

>retro_mmur_43
ACCTATGGAGTTGTGTATAAGGGTAGACACAAAACTACAGGCCAAGTGGTAGCCATGAAGAAAATCAGACTAGAAAGTGA
AGAGGAAGGGGTTCCTAGTACTGCAATTCGGGAAATTTCTCTATTAAAAGAACTTCGTCATCCAAATAGAGTCAGTCTTC
AAGATGTGCTTATGCAGGATTCCAGGTTATATCTCATCTTTGAATTTCTTTCCATGGACCTCAAGAAATATTTGGATTCT
ATCCCTCCTGGTCAGTTCATGGACTCTTCACTTGTTAAGAGTTATTTATACCAAATCCTACAGGGGATTGTGTTTTGTCA
CTCTAGAAGAGTTCTTCACAGAGACTTAAAACCTCAAAATCTATTGATTGATGACAAAGGAACAATTAAACTGGCTGATT
TTGGCCTTGCCAGAGCTTTTGGAATACCTATTAGAGTATATACACATGAGGTAGTAACACTCTGGTACAGATCTCCAGAA
GTATTGTTGGGGTCAGCTCGTTACTCGACTCCAGTTGACATTTGGAGTATAGGCACCATATTTGCAGAATTAGCAACTAA
GAAACCACTTTTCCATGGGGATTCAGAAATCGATCAACTCTTCAGGATTTTCAGAGCTTTGGGCACACCCAACAATGAAG
TGTGGCCAGACGTGGAGTCTTTACAGGACTATAAGAATACATTTCCCAAATGGAAACCAGGAAGCCTTGCATCCCATGTC
AAAAACTTGGATGAAAATGGTTTAGATTTGCTCTCGAAAATGTTAGTCTATGATCCCCCCAAACGAATTTCTGGCAAGAT
GGCACTGAATCATCCATATTTTAATGATCTGGACAATCAGATTAAGAAGATGTAG

Alignment

ORF - retro_mmur_43 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.25 %
• Parental protein coverage: 95.61 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVLMQDSRLYLIFEFL
          TYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRHPN.VSLQDVLMQDSRLYLIFEFL
Retrocopy TYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRHPNRVSLQDVLMQDSRLYLIFEFL

Parental  SMDLKKYLDSIPPGQFMDSSLVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDKGTIKLADFGLARAF
          SMDLKKYLDSIPPGQFMDSSLVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDKGTIKLADFGLARAF
Retrocopy SMDLKKYLDSIPPGQFMDSSLVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDKGTIKLADFGLARAF

Parental  GIPIRVYTHEVITLWYRSPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGTP
          GIPIRVYTHEV.TLWYRSPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGTP
Retrocopy GIPIRVYTHEVVTLWYRSPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGTP

Parental  NNEVWPDVE-LQDYKNTFPKWKPGXXXXXXXXXXXXXXXXXXKMLVYDPAKRISGKMALNHPYFNDLDNQ
          NNEVWPDVE.LQDYKNTFPKWKPG..................KMLVYDP.KRISGKMALNHPYFNDLDNQ
Retrocopy NNEVWPDVESLQDYKNTFPKWKPGSLASHVKNLDENGLDLLSKMLVYDPPKRISGKMALNHPYFNDLDNQ

Parental  IKKM
          IKKM
Retrocopy IKKM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_43 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_43 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000007001	2 retrocopies	retro_cjac_1846, retro_cjac_671,
Cavia porcellus	ENSCPOG00000005402	3 retrocopies	retro_cpor_1414, retro_cpor_1422, retro_cpor_200,
Dasypus novemcinctus	ENSDNOG00000018590	1 retrocopy	retro_dnov_265,
Equus caballus	ENSECAG00000009716	1 retrocopy	retro_ecab_637,
Felis catus	ENSFCAG00000014972	1 retrocopy	retro_fcat_329,
Microcebus murinus	ENSMICG00000003789	1 retrocopy	retro_mmur_893,
Microcebus murinus	ENSMICG00000005793	1 retrocopy	retro_mmur_43 ,
Monodelphis domestica	ENSMODG00000017091	1 retrocopy	retro_mdom_702,
Rattus norvegicus	ENSRNOG00000000632	1 retrocopy	retro_rnor_1638,
Tupaia belangeri	ENSTBEG00000017549	3 retrocopies	retro_tbel_3309, retro_tbel_807, retro_tbel_812,
Tursiops truncatus	ENSTTRG00000001085	2 retrocopies	retro_ttru_1619, retro_ttru_1634,