RetrogeneDB ID: retro_mmur_168

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1542:113981..114248(+)
• Located in intron of: ENSMICG00000008213

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PAGE3
• Ensembl ID: ENSMICG00000007757
• Aliases: None
• Description: P antigen family, member 3 (prostate associated) [Source:HGNC Symbol;Acc:4110]

Sequence

>retro_mmur_168
ATGAGTCACCGAGGAAGATCAACTTACAGGCCTAGAGGAAGAAGAAGTGAAGAAGAATTTTCTCAGCAGGCCCAGCAGGC
TGGTGATGAACGCCGTGGTCAAGATGAGCCACCAGCTGGAAACCAGGATGTTAATCCTGATCAGGAGGTAAATGAGGGAG
CACCTGCAGTTCAAGGGCCTGACCTGGAAATTGATGTCCAGGAACTAGATGAGCCAAAGACTGGGCGTGAGCGTGGAGAT
GGTCCTGATGTCCAGGGGAAAAGTCTA

Alignment

ORF - retro_mmur_168 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.43 %
• Parental protein coverage: 89.11 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSHRGRSTYRPRPRRNDQEFCQRIGAVVQPRDEEPPQEEPPTGIQGVTPGQK-RDQAPEIQGPDLEADTQ
          MSHRGRSTYRPR.RR...EF.Q......Q..DE...Q.EPP.G.Q.V.P.Q.....AP..QGPDLE.D.Q
Retrocopy MSHRGRSTYRPRGRRSEEEFSQQ---AQQAGDERRGQDEPPAGNQDVNPDQEVNEGAPAVQGPDLEIDVQ

Parental  ELSQPETGVE-CLGPDVKEESL
          EL..P.TG.E...GPDV...SL
Retrocopy ELDEPKTGRERGDGPDVQGKSL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_168 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_168 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000032005	1 retrocopy	retro_cfam_987,
Homo sapiens	ENSG00000204279	1 retrocopy	retro_hsap_1010,
Gorilla gorilla	ENSGGOG00000028520	1 retrocopy	retro_ggor_802,
Microcebus murinus	ENSMICG00000007757	2 retrocopies	retro_mmur_168 , retro_mmur_396,
Mustela putorius furo	ENSMPUG00000005401	1 retrocopy	retro_mputfur_219,