RetrogeneDB ID: retro_ggor_802

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 12:58640112..58640438(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PAGE3
• Ensembl ID: ENSGGOG00000028520
• Aliases: None
• Description: None

Sequence

>retro_ggor_802
ATGAGTGGGGGAAGAAGATTAACATTTAGGCTAGAGGAAGACAAAATGTACAAGAAACTTCTAAGCCAGTTGGGCCTGTG
GTTGTCCAGCAGCCCAGTGATGAACAGACTCAAAAAGAGGAGCCACTGACTGAAAGTAAGGATGTTATCCCTGGTCAGGA
GAGAGATGAGGGGGCACCCAAGAGTCAAAGTCCTGGCTTGGAAGCCGATATTCAGGAAGTGTCTCAGGCAAAAACTGGAG
GTAAATGGGGAGATGATCCTTATGTCAAGGGGGAGATCTATCAAATCTAGAGCCTTGCTTAAGTGACGAAAGCAGGCGAA
GGGCAA

Alignment

ORF - retro_ggor_802 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.33 %
• Parental protein coverage: 97.35 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  ISGHQRTRSR-SRERRDDQDSNHPVGAVVAQEPPSDDQLQQEEPPIESQDYTPGQERDEGALDFQVLGLA
          .SG..R...R..R.R...Q....PVG.VV.Q.P.SD.Q.Q.EEP..ES.D..PGQERDEGA...Q..GL.
Retrocopy MSGGRRLTFR<ARGRQNVQETSKPVGPVVVQQP-SDEQTQKEEPLTESKDVIPGQERDEGAPKSQSPGLE

Parental  AYLWELTRSKTGGERGDGPNVKEEF-LPNLEPVK-IPEAGEGQ
          A...E....KTGG..GD.P.VK.E..L.NLEP......AGEGQ
Retrocopy ADIQEVSQAKTGGKWGDDPYVKGEI<LSNLEPCL>VTKAGEGQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.03 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	2.59 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_802 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_802 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000032005	1 retrocopy	retro_cfam_987,
Homo sapiens	ENSG00000204279	1 retrocopy	retro_hsap_1010,
Gorilla gorilla	ENSGGOG00000028520	1 retrocopy	retro_ggor_802 ,
Microcebus murinus	ENSMICG00000007757	2 retrocopies	retro_mmur_168, retro_mmur_396,
Mustela putorius furo	ENSMPUG00000005401	1 retrocopy	retro_mputfur_219,