RetrogeneDB ID: retro_mmur_1544

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_8064:33420..34068(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000014184
• Aliases: None
• Description: None

Sequence

>retro_mmur_1544
CTAATTCTGGTTCAACACTGGCGTGAGACAGTGTGCAAGGAGGTGCAAAATGACTGTAGAGACCCTCCACATTACTGGAC
AATACACAGGTTGTGGTCTGATGAAACTGAAGAATGTAATCAATTGTGGCACTTTAATTTAGAAGAGATTAAGGATCTTT
TGCCAGAAGTGAAGACCTACTGGCCTGATGTAATTGATTCCTCTCCTAATGGCAGCCAGTTCTGGAAGCACGAATGGGAG
AAGCATGGGACCTGCGCCGCTTAGGTGGAGGCTCTCAACTCTCAGAAGAAGTACTTTGGCAAGAGTCTGGCTTTGTAACA
AAAGCTGGACCTCATCAGTATGCTCCTAAAGTTTGGGATAACACCTTTTATCAATTGCTACCAGGTTGGAGATTTTAAAG
ATACGCTTACCAGAGTGTATGGAATGGTACCTAAACTCTAGTGCCTTCTGCCAAGACAGGGTAAGGCAGTGAAGACAAAC
AGTCAGATAAAGCTCTGCCTCACCTAAGCAGGACCAGCAGCTGAGCAACTGCACGGAACCCTCAAGCAGGAGGCCTGGCT
GGCTGGGGCGGCTGCCAAGAACCAGGGGCTGTGGGTCTGTCTGTGAAGACGGCCCGTCTTTTACCCCCCACCTAAAAAGA
TCAAGCAC

Alignment

ORF - retro_mmur_1544 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.71 %
• Parental protein coverage: 96.82 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LILVQHWPETVCEEVQNDCRDPPNYWTIHGLWPDKTEECNRSWHFNLEEIKDLLPEMKTYWPDVLHPSPN
          LILVQHW.ETVC.EVQNDCRDPP.YWTIH.LW.D.TEECN..WHFNLEEIKDLLPE.KTYWPDV...SPN
Retrocopy LILVQHWRETVCKEVQNDCRDPPHYWTIHRLWSDETEECNQLWHFNLEEIKDLLPEVKTYWPDVIDSSPN

Parental  RSQFWKHEWEKHGTCAAQVEALDSQKKYFGKSLALYQKLDLSSVLLKLGITPSINYYQVGDFKDALTRVY
          .SQFWKHEWEKHGTCAA.VEAL.SQKKYFGKSLAL.QKLDL.S.LLK.GITP.IN.YQVGDFKD.LTRVY
Retrocopy GSQFWKHEWEKHGTCAA*VEALNSQKKYFGKSLAL*QKLDLISMLLKFGITPFINCYQVGDFKDTLTRVY

Parental  GVVPKLQCLPPREXXXXXXXXQIKLCLT-KQDQQLSNCTE--LKQEAWL-AGAAAKNQGLWVC--EDGVF
          G.VPKL.CL.PR.........QIKLCLT.KQDQQLSNCTE.......WL...AA.KNQGLWVC.....VF
Retrocopy GMVPKL*CLLPRQGKAVKTNSQIKLCLT>KQDQQLSNCTEPSSRRPGWL<GAAA-KNQGLWVCL*RRPVF

Parental  YPPPKKIKH
          YPPPKKIKH
Retrocopy YPPPKKIKH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1544 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1544 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Loxodonta africana	ENSLAFG00000003359	1 retrocopy	retro_lafr_764,
Microcebus murinus	ENSMICG00000014184	1 retrocopy	retro_mmur_1544 ,
Macaca mulatta	ENSMMUG00000005673	1 retrocopy	retro_mmul_1684,
Monodelphis domestica	ENSMODG00000006193	1 retrocopy	retro_mdom_1994,
Nomascus leucogenys	ENSNLEG00000011573	1 retrocopy	retro_nleu_3005,
Pongo abelii	ENSPPYG00000017277	1 retrocopy	retro_pabe_3128,
Pan troglodytes	ENSPTRG00000018796	1 retrocopy	retro_ptro_2529,