RetrogeneDB ID: retro_mmur_1166

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_27912:694..1382(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LYPLA2
• Ensembl ID: ENSMICG00000005841
• Aliases: None
• Description: lysophospholipase II [Source:HGNC Symbol;Acc:6738]

Sequence

>retro_mmur_1166
ATGTGTGGTAACACCATGTCTGTGTCCCTGCTCACCGACACTGCCACTGTGTCTGGAGCTGAGTGGGGATCAGCTATGGT
TATTTTTTTATTAGTATGTGGGCTTAGAGACACAGGGCACAGCTGGGCTGACGCCCTTTCCACCATCCAGCTCCCTCATA
TCAAGTACATCTGTCCCCATGCACCTAAGATCCCTGTGACATTCAACATGAAGATGGTGATGCCCTCCTGGTTTGAACTG
ATGGGGCTGAGTCCAGAGGACGAGGCTGGCATCAAGAAGGCAGCAGAGAACATGAAGGCCTTGATGGAGCACCAGATGAA
GAATGGGATCCCTGCCAATCAGATTGTCCTGGGAGGCTTTTCACAGGGTGGAGTGTTGTCTCTCTACACAGCCCTCACCT
GCCCCCACCCTCTGGCTGGCATTGTGACATTGAACTATTGGCTGCCTCTGCACTGGGCCTTCCTCCAGGCAGCCAATGGC
AGTGCCAAGGACCTGGCCACTCTTCAGTGCCTTGGGAACTGAGCCCCATGATGCCTGTACAGTTTGGGACCCTGACAGTC
AAGAAGCTCCGGTCTGTTGTCACACCTGCCAGGGTCCAGTTCAAGACATATCTGGGTGTCATGCATGGCTCTTGTCCTCA
GGTGATAGCAACTGTGAAGGATTTCTCGAGAAGCTGCTGCCTCCTGTC

Alignment

ORF - retro_mmur_1166 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.28 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MCGNTMSVPLLTDAATVSGAERETAAVIFLH--GLGDTGHSWADALSTIRLPHVKYICPHAPRIPVTLNM
          MCGNTMSV.LLTD.ATVSGAE...A.VIFL...GL.DTGHSWADALSTI.LPH.KYICPHAP.IPVT.NM
Retrocopy MCGNTMSVSLLTDTATVSGAEWGSAMVIFLLVCGLRDTGHSWADALSTIQLPHIKYICPHAPKIPVTFNM

Parental  KMVMPSWFDLMGLSPDAPEDEAGIKKAAENIKALIEHEMKNGIPANRIVLGGFSQGGALSLYTALTCPHP
          KMVMPSWF.LMGLS...PEDEAGIKKAAEN.KAL.EH.MKNGIPAN.IVLGGFSQGG.LSLYTALTCPHP
Retrocopy KMVMPSWFELMGLS---PEDEAGIKKAAENMKALMEHQMKNGIPANQIVLGGFSQGGVLSLYTALTCPHP

Parental  LAGIVALSCWLPLHRAFPQAANGSAKDLAILQCHG-ELDPMVPVRFGALTAEKLRSVVTPARVQFKTYPG
          LAGIV.L..WLPLH.AF.QAANGSAKDLA.LQC.G.EL.PM.PV.FG.LT..KLRSVVTPARVQFKTY.G
Retrocopy LAGIVTLNYWLPLHWAFLQAANGSAKDLATLQCLG<ELSPMMPVQFGTLTVKKLRSVVTPARVQFKTYLG

Parental  VMHSSCPQEMAAVKE-FLEKLLPPV
          VMH.SCPQ..A.VK..FLEKLLPPV
Retrocopy VMHGSCPQVIATVKD<FLEKLLPPV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1166 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1166 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000011625	1 retrocopy	retro_btau_1605,
Callithrix jacchus	ENSCJAG00000020914	1 retrocopy	retro_cjac_2585,
Dasypus novemcinctus	ENSDNOG00000011285	2 retrocopies	retro_dnov_1186, retro_dnov_134,
Gorilla gorilla	ENSGGOG00000004330	3 retrocopies	retro_ggor_2114, retro_ggor_2413, retro_ggor_2626,
Macropus eugenii	ENSMEUG00000004768	2 retrocopies	retro_meug_1134, retro_meug_1526,
Microcebus murinus	ENSMICG00000005841	1 retrocopy	retro_mmur_1166 ,
Otolemur garnettii	ENSOGAG00000032260	1 retrocopy	retro_ogar_2866,
Pongo abelii	ENSPPYG00000001733	1 retrocopy	retro_pabe_142,
Tursiops truncatus	ENSTTRG00000016127	1 retrocopy	retro_ttru_1522,