RetrogeneDB ID: retro_mmur_1155

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_26704:6668..7524(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NAB1
• Ensembl ID: ENSMICG00000007306
• Aliases: None
• Description: NGFI-A binding protein 1 (EGR1 binding protein 1) [Source:HGNC Symbol;Acc:7626]

Sequence

>retro_mmur_1155
CCCCATGCCACTGAGGGGAGCACAGCCTCTCCCCTGCAGACCTGGGCTCCCCAGCCTCCCCAAAGGAAAGCGGCGGCAGG
GCGCTGGATGCTGCCGCTGCGCTCTCTGTGGCCCAGTGTGTGGAACGAATGGCCCCCACACTACCCAAAAGTGACTTGAG
CGAAGTGAAAGAGCTGCTAAAAACCAACAAGAAGTTGGCCAAAATGTTTAGTCACATCTTTGAGATGAGTGATGTTGATC
CACACAAAGAAGAGGAAATTCGGAAATACAGTGCAACATATGGCAGATTTGACTCCAAGAAAAAGGATGGGAAACATCTC
ATGCTTCATGAGCTCACTGTCAAGGAAGCAGCTGCTCGACTCTGTGTGAAGAATAATGCTCTGCTGACAAGAAGACATGA
ACTTTTTGCTCTGGCTAGGCAAATTTCTCGAGAAGTCACCCATAAATATACTTATAGAACCACCAAGTCAAAGTGTGGAG
AAAGAGAGGAATGATCCCCAAAGAGAATTAAAGTGGAGGATGGGTTTCCAGATTTCCAGGACTCCGTGCAAACGCTCTTC
CAGCAGGCTAGAGCTAAGAGTGAAGAACTCGCAGCTCTTACTTCACAGCAGCCTGAAAAGGTGACGGCAAAGCAGATGGA
GTTCCTCTGCACCCAAGCTGGCTATGAGAGACTGCAGCATGCTGAGAGAAGACTGCCTGCAGGACTTTATAGGCAGAGCT
AGAAGAGCACAGTCCTAATGGCTTGACTTCCAATAACTCAGATGGACAAGGAGAAAGACCTCTGAATCTCCGAATTCCTA
ATTTACAGAACAGACAACCCCATCATTTTGTGGTAGATGGGGAGCTGAGCAGACTA

Alignment

ORF - retro_mmur_1155 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.97 %
• Parental protein coverage: 62.23 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PHATES-EHSLSPADLGSPASPKESS-EALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKM
          PHATE..EHSLSPADLGSPASPKES...ALDAAAALSVA.CVERMAPTLPKSDL.EVKELLKTNKKLAKM
Retrocopy PHATEG<EHSLSPADLGSPASPKESGGRALDAAAALSVAQCVERMAPTLPKSDLSEVKELLKTNKKLAKM

Parental  IGHIFEMSDDDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALA
          ..HIFEMSD.DPHKEEEIRKYSA.YGRFDSK.KDGKHL.LHELTV.EAAA.LCVK.NALLTRR.ELFALA
Retrocopy FSHIFEMSDVDPHKEEEIRKYSATYGRFDSKKKDGKHLMLHELTVKEAAARLCVKNNALLTRRHELFALA

Parental  RQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELAALTSQQPEKVM
          RQISREVT.KYTYRTTKSKCGER.E.SPKRIKVEDGFPDFQDSVQTLFQQARAKSEELAALTSQQPEKV.
Retrocopy RQISREVTHKYTYRTTKSKCGEREE*SPKRIKVEDGFPDFQDSVQTLFQQARAKSEELAALTSQQPEKVT

Parental  AKQMEFLCTQAGYERLQHAERRLSAGLYRQS-SEEHSPNGLTSDNSDGQGERPLNLRMPNLQNRQPHHFV
          AKQMEFLCTQAGYERLQHAERRL.AGLYRQS..EEHSPNGLTS.NSDGQGERPLNLR.PNLQNRQPHHFV
Retrocopy AKQMEFLCTQAGYERLQHAERRLPAGLYRQS<LEEHSPNGLTSNNSDGQGERPLNLRIPNLQNRQPHHFV

Parental  VDGELSRL
          VDGELSRL
Retrocopy VDGELSRL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1155 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1155 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000010241	1 retrocopy	retro_chof_2490,
Callithrix jacchus	ENSCJAG00000005748	1 retrocopy	retro_cjac_4224,
Gorilla gorilla	ENSGGOG00000013842	1 retrocopy	retro_ggor_3068,
Microcebus murinus	ENSMICG00000007306	2 retrocopies	retro_mmur_1155 , retro_mmur_1211,
Nomascus leucogenys	ENSNLEG00000006665	1 retrocopy	retro_nleu_2288,
Pongo abelii	ENSPPYG00000013025	1 retrocopy	retro_pabe_3822,
Ictidomys tridecemlineatus	ENSSTOG00000000098	1 retrocopy	retro_itri_1621,
Tupaia belangeri	ENSTBEG00000011954	1 retrocopy	retro_tbel_3626,