RetrogeneDB ID: retro_mmur_1095

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_21725:8129..9407(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GDI1
• Ensembl ID: ENSMICG00000016418
• Aliases: None
• Description: GDP dissociation inhibitor 1 [Source:HGNC Symbol;Acc:4226]

Sequence

>retro_mmur_1095
GAATGCATCCTGTCAGGTATAATGTCAGTGAATGGCAAGAAAATTCTTCACATGGATCGGAACCCATATTATGGAGGAGA
GAGTGGATCTATAACACCATTGGAAGATTTATACAAAAGATTTAAATTACCAGGAACACCACCAGCATCAATGGGGAGAG
GAAGAGACTGTAATGTTGACTTGATTCCCAAGTTCCTTATGGCTAATGGTCAGCTGGTTAAGATGCTGCTTTATACAGAG
GTCACCTGCTATCTGGATTTCAAAGTGATTGAAGGGAGCTTTGTCTATAAGGGTGGAAAAATCTACAAGGCTCCTTCTAC
TGAAGCAGAAGCTCTGGCATCTAGTTTAATGGGACTGTTTGAATAATGCAGCTTCAGGAAATTCCTAGTGTATGTGGCCA
ACTTTGATGAAAAAGATACCAGAACTTTTGAGGGCATTGATCCTAAGAAGACCACAATGCACGATGTGTATAAGAAATTT
GACTTGGGCCAAGATGTTATAGATTTTACTGGTCATGCTCTTGCACTTTACAGAACTGATGACTACTTAGATCAACCATG
TTGTGAAACCATTAATAGAATTAAACTTTACAGTGAGTCTTTGGCAAGATATGGCAAAAGCCCATACCTGTATCGGCTCT
ATGGCCTTGAAGAACTGCCACAGGGATTTGTGAGGCTAAGTGCTATTTATGGAGGTACCTACATGCTGAATAAACCAATT
GAAGAAATCATTGTCCAGAATGGAAAAGTGATTGGTGTAAAATCTGAGGGAGAAATTGCTCACTGTAAGCAGCTCATCTG
CACCCCCAGCTATGTGAAAGAACGGGTGGAGAAAGTGGGCCAGGTGATCAGAGTGATCCGCATCCTCAGTCACCCCATCA
AGAACACCAACGACGCCAACTCCTGCCAGATCATTATTCCACAGAACCAAGTCAATTGAAAGTCAGACATCTATGTCTGC
AAGATATCCTCTGCACACAATGTGGGGAAGTACATTGCCATAGTTAGCACAACTGTGGAAACCAAGGAGCCCGAGAAGGA
AATCAGATCAGCTCCGGAGCTCTTAGAACCAATTGGACATAAGTTTGTTAGCATCAGTGACCTCCTTGTACCAACAGATT
TGGGAACAGAAAGCCAGATCTTTATTTCCCACACATATGATGCTACAACTCACTTTGAGACAACCTGCGATGACATTAAA
GACATCTATGAGAAGATGACAGGATCAGAGTTTGACTTTGAGGAAATGAAGGGCAAGAAAATTGACATCTATGGGGAA

Alignment

ORF - retro_mmur_1095 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.32 %
• Parental protein coverage: 99.31 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANG
          ECILSGIMSVNGKK.LHMDRNPYYGGES.SITPLE.LYKRF.L...PP.SMGRGRD.NVDLIPKFLMANG
Retrocopy ECILSGIMSVNGKKILHMDRNPYYGGESGSITPLEDLYKRFKLPGTPPASMGRGRDCNVDLIPKFLMANG

Parental  QLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDP
          QLVKMLLYTEVT.YLDFKV.EGSFVYKGGKIYK.PSTE.EALAS.LMG.FE...FRKFLV.VANFDE.D.
Retrocopy QLVKMLLYTEVTCYLDFKVIEGSFVYKGGKIYKAPSTEAEALASSLMGLFE*CSFRKFLVYVANFDEKDT

Parental  KTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYL
          .TFEG.DP..T.M.DVY.KFDLGQDVIDFTGHALALYRTDDYLDQPC.ETINRIKLYSESLARYGKSPYL
Retrocopy RTFEGIDPKKTTMHDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYL

Parental  YPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIXXXXXXXXXXXXXGEVARCKQLICDPSYIPDRVRKAG
          Y.LYGL.ELPQGF.RLSAIYGGTYMLNKP...I.............GE.A.CKQLIC.PSY...RV.K.G
Retrocopy YRLYGLEELPQGFVRLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIAHCKQLICTPSYVKERVEKVG

Parental  QVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTEPEKE
          QVIR.I.ILSHPIKNTNDANSCQIIIPQNQVN.KSDIYVC.IS.AHNV...GKYIAI.STTVET.EPEKE
Retrocopy QVIRVIRILSHPIKNTNDANSCQIIIPQNQVN*KSDIYVCKISSAHNV---GKYIAIVSTTVETKEPEKE

Parental  VEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMK
          ...A.ELLEPI..KFV.ISDL..P.D.G.ESQ.F.S..YDATTHFETTC.DIKDIY..M.GS.FDFE.MK
Retrocopy IRSAPELLEPIGHKFVSISDLLVPTDLGTESQIFISHTYDATTHFETTCDDIKDIYEKMTGSEFDFEEMK

Parental  RKQNDVFGE
          .K..D..GE
Retrocopy GKKIDIYGE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1095 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1095 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000010921	4 retrocopies	retro_meug_1228, retro_meug_2135, retro_meug_561, retro_meug_795,
Microcebus murinus	ENSMICG00000016418	1 retrocopy	retro_mmur_1095 ,
Sarcophilus harrisii	ENSSHAG00000005650	1 retrocopy	retro_shar_43,
Tupaia belangeri	ENSTBEG00000012540	4 retrocopies	retro_tbel_1832, retro_tbel_2262, retro_tbel_2457, retro_tbel_3930,
Tursiops truncatus	ENSTTRG00000011454	1 retrocopy	retro_ttru_1205,