RetrogeneDB ID: retro_meug_2135

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold93246:4371..5439(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000010921
• Aliases: None
• Description: None

Sequence

>retro_meug_2135
ATGGACGAGGAGCACGACGTGATCGTGCTGGGCATGGGCCTCATGGAATGTACTCTCTCTGGCATCATGTCTGTGAACGG
GAAGAAAGTGTTGCACATGGATCGCAATCCTTACTATGGGGGTGAAAACTCCTCTATCACACCCCTGGAAGAGCTGTTCA
AACGGTTTGACCTGTCTGAAGGGCCTCCTGAAAGCTTGGGCAGGGGTGGAGACCAGAATGTTGACTTGATCCCCAAATTC
CTCATGGCCAATGGCCAGTTGGTGAAGATGTTGCTGTACACCTAAGTGACTCGTTACCTAGACTTCAAAGTGGTGGAAGG
CAGCTTTGTCTACAACGGGGGCAAGATCTACAAGGTGCTATCTACTGAGACTGAGGCCTTGGACTCCAACCTGATGGGCA
TGTTCAAGAAACGCCGATTTAGAAAGTTTCTGGTATTTGTGGCAAACTTCAATGAGAATAACCCCAAGAGCTTTGAGGGT
GTTGATCCTCAGACCACAACCATGCGAGATGCGTATAAGATGTTTGACTTGGGCCAAGATGTTATTGACTTCACTCAGCA
TGCTCTGGCACTCTACCAAACTGATGACTACTTGGACCAGCCCTGTCTCAAGACCATTAACCGCATCAAACTGTATAGCG
AGTCTCTGGCCCCGTATGGGAAGAGCCCATACCTGTACCCTCTCTATGGCCTCGGCAAGCTCCCCCAGGGATTTGCAAGA
TTGAGTGCCATCTATGGTGGGATATACATGCTGAACAAACCTGTGGATGATACCATCATGGAGAATGGAAAGGTGGTAGG
GGTGAAGTCAGAGGGGGGAGGTGGCCTGTTACAAGCAGCTGATCTGTGACCCCAGCTATATCCCTGACTGCATTCGAAAG
GCTGGCCAGGTCATCCGAGTCATCTGTATTCTCAGCCACCCCCATCAAGAACACCAATGATGCCAACTCCTGCCAAATCA
TCATTCCCCAAAAATCAGTCAACCGGAATCAGACATCTATGTGTGCATGATCTCCTAGCCCATAATGTGGCTGCCCAGGG
AAAGTACATTGCTATTGTCAGCACCACG

Alignment

ORF - retro_meug_2135 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.0 %
• Parental protein coverage: 79.64 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELFKRFDLPEGPPESLGRGR
          MDEE.DVIVLG.GL.EC.LSGIMSVNGKKVLHMDRNPYYGGE.SSITPLEELFKRFDL.EGPPESLGRG.
Retrocopy MDEEHDVIVLGMGLMECTLSGIMSVNGKKVLHMDRNPYYGGENSSITPLEELFKRFDLSEGPPESLGRGG

Parental  DWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRF
          D.NVDLIPKFLMANGQLVKMLLYT.VTRYLDFKVVEGSFVY.GGKIYKV.STETEAL.SNLMGMF.KRRF
Retrocopy DQNVDLIPKFLMANGQLVKMLLYT*VTRYLDFKVVEGSFVYNGGKIYKVLSTETEALDSNLMGMFKKRRF

Parental  RKFLVFVANFDENDPKSFEGVDPQTTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIK
          RKFLVFVANF.EN.PKSFEGVDPQTTTMRD.YK.FDLGQDVIDFT.HALALY.TDDYLDQPCL.TINRIK
Retrocopy RKFLVFVANFNENNPKSFEGVDPQTTTMRDAYKMFDLGQDVIDFTQHALALYQTDDYLDQPCLKTINRIK

Parental  LYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSE-GEVARCKQ
          LYSESLA.YGKSPYLYPLYGLG.LPQGFARLSAIYGG.YMLNKPVDD.IMENGKVVGVKSE.GEVA..KQ
Retrocopy LYSESLAPYGKSPYLYPLYGLGKLPQGFARLSAIYGGIYMLNKPVDDTIMENGKVVGVKSE>GEVACYKQ

Parental  LICDPSYIPDRVRKAGQVIRVICILSH-PIKNTNDANSCQIIIPQNQVNR-KSDIYVCMIS-YAHNVAAQ
          LICDPSYIPD..RKAGQVIRVICILSH.PIKNTNDANSCQIIIPQ..VNR..SDIYVCMIS..AHNVAAQ
Retrocopy LICDPSYIPDCIRKAGQVIRVICILSH>PIKNTNDANSCQIIIPQKSVNR<ESDIYVCMIS<LAHNVAAQ

Parental  GKYIAIVSTT
          GKYIAIVSTT
Retrocopy GKYIAIVSTT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2135 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2135 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000010921	4 retrocopies	retro_meug_1228, retro_meug_2135 , retro_meug_561, retro_meug_795,
Microcebus murinus	ENSMICG00000016418	1 retrocopy	retro_mmur_1095,
Sarcophilus harrisii	ENSSHAG00000005650	1 retrocopy	retro_shar_43,
Tupaia belangeri	ENSTBEG00000012540	4 retrocopies	retro_tbel_1832, retro_tbel_2262, retro_tbel_2457, retro_tbel_3930,
Tursiops truncatus	ENSTTRG00000011454	1 retrocopy	retro_ttru_1205,