RetrogeneDB ID: retro_meug_561

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold137263:1417..2265(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000010921
• Aliases: None
• Description: None

Sequence

>retro_meug_561
ATGAATGAGGAGTATGATGTGATCATTCTGGTCACCTGCTTCATGGAATGCATAGTTTTGGGGATCATGTCAGTTAATGA
AAAGAAGGTCCTTCACATGGATAGAAACTCCTATTATGGAGGTGAAAGTGCATCCATTACACCACTGGAAGATTTATACA
AGAGGTTTAATATACCAGGATCACCACCAGCCTTAATGGGAAGGGGAAGAAACTAGAATGTGGACCTAATCCCCAAATTC
CTTATGGCAAATGATCAGTTGGTTAAGATACTGCTTTATACAGAAGTCACCCAATATCTGGACTTCAAGGTAATTGAAGG
AAGCTTTTTCCATAAGGGAGGGAAAGTCTACAAAGTTCTTTCCACTGAGGCAGAAGCCTTGACATGTAGCTTGATGGGGC
TGTTTGAGAAACATCGATTCAGAAGATTCTTAGTATATGTTGCCAATTTTGATGAAAAAGACTCCAGAACTTTTGAGGGT
GTTAATCCTAGGAAGACTACAATGTGAGATGTGTGAAAGAAGTTTGATTTGGGCCAAGACATCATAGATTTCACTGGCCA
TGCCCTTGCCCTTTACAGAACTGATGACTATTTAGATCAACCATGTTATGAAACCATCAACAGGATCAAACTTTATAGTA
ACTCTTTGGCAAGATATGGCAAGAGTCCATATCTTTATCGACTCTATGGCCTTGGAGAGCTGCCCCAAGGACTCACAAGG
CTAAGTGCCATTTATGGTACCTATATGTTGAACAAGTCAATTGAAGAATCATTGTAAAAGATGGACTAGTAATTGGTGAG
AAATCTGAAGGAGAGATTGCCGCTTGCAAGCAGCTTATCTGTGAGCCT

Alignment

ORF - retro_meug_561 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.14 %
• Parental protein coverage: 63.53 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELFKRFDLPEGPPESLGRGR
          M.EEYDVI.L.T...ECI..GIMSVN.KKVLHMDRN.YYGGES.SITPLE.L.KRF..P..PP...GRGR
Retrocopy MNEEYDVIILVTCFMECIVLGIMSVNEKKVLHMDRNSYYGGESASITPLEDLYKRFNIPGSPPALMGRGR

Parental  DWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRF
          ..NVDLIPKFLMAN.QLVK.LLYTEVT.YLDFKV.EGSF..KGGK.YKV.STE.EAL...LMG.FEK.RF
Retrocopy N*NVDLIPKFLMANDQLVKILLYTEVTQYLDFKVIEGSFFHKGGKVYKVLSTEAEALTCSLMGLFEKHRF

Parental  RKFLVFVANFDENDPKSFEGVDPQTTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIK
          R.FLV.VANFDE.D...FEGV.P..TTM.DV.KKFDLGQD.IDFTGHALALYRTDDYLDQPC.ETINRIK
Retrocopy RRFLVYVANFDEKDSRTFEGVNPRKTTM*DV*KKFDLGQDIIDFTGHALALYRTDDYLDQPCYETINRIK

Parental  LYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDD-IIMENGKVVGVKSEGEVARCKQ
          LYS.SLARYGKSPYLY.LYGLGELPQG..RLSAIY.GTYMLNK.....II...G.V.G.KSEGE.A.CKQ
Retrocopy LYSNSLARYGKSPYLYRLYGLGELPQGLTRLSAIY-GTYMLNKSIEE<IIVKDGLVIGEKSEGEIAACKQ

Parental  LICDP
          LIC.P
Retrocopy LICEP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_561 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_561 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000010921	4 retrocopies	retro_meug_1228, retro_meug_2135, retro_meug_561 , retro_meug_795,
Microcebus murinus	ENSMICG00000016418	1 retrocopy	retro_mmur_1095,
Sarcophilus harrisii	ENSSHAG00000005650	1 retrocopy	retro_shar_43,
Tupaia belangeri	ENSTBEG00000012540	4 retrocopies	retro_tbel_1832, retro_tbel_2262, retro_tbel_2457, retro_tbel_3930,
Tursiops truncatus	ENSTTRG00000011454	1 retrocopy	retro_ttru_1205,