RetrogeneDB ID: retro_mmul_581

Retrocopy location

• Organism: Rhesus macaque (Macaca mulatta)
• Coordinates: 1:210312780..210313112(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MOCS2
• Ensembl ID: ENSMMUG00000020449
• Aliases: None
• Description: None

Sequence

>retro_mmul_581
ACAAGAAATAACTTTGAAGGGAAAAAAGTCATTAGCTTAGAATATGAAGGGTATCTACCCATGGTGGAAAATGAAGTCAA
AAACATTTGTAGTGACATCAGGCAGAAATGGCCAGTCAAACACATAGCAGTGTTCCATGGACTTGGCCTGGTTCCAGGGT
CAGAAGCAAGCATAATCAGTGCTGTGTCCTCAGCCCACAGAGCTGCATCTCTTGAAGCTGTGAGCTATGCCACTGATACT
TTAAAAGCCAAGATGCCCATATGCCAAAGGAAATATACGAAGAGTCATCATCTTGGAAAGGAAACATAGAGTGCTTTGGG
GCATTCAACAAT

Alignment

ORF - retro_mmul_581 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.71 %
• Parental protein coverage: 59.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  TRNNFEGKKVISLEYEAYLPMAKNEVKKICSDIRQKWPVKHIAVFHRLGLVPVSEASIIIAVSSAHRAAS
          TRNNFEGKKVISLEYE.YLPM..NEVK.ICSDIRQKWPVKHIAVFH.LGLVP.SEASII.AVSSAHRAAS
Retrocopy TRNNFEGKKVISLEYEGYLPMVENEVKNICSDIRQKWPVKHIAVFHGLGLVPGSEASIISAVSSAHRAAS

Parental  LEAVSYAIDTLKAKVPIWK-KEIYEESSSWKGNKECFWVSNN
          LEAVSYA.DTLKAK.PI...KEIYEESSSWKGN.ECF...NN
Retrocopy LEAVSYATDTLKAKMPICQ<KEIYEESSSWKGNIECFGAFNN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	0.00 RPM	23.42 RPM
SRP007412_brain_prefrontal_cortex	0.00 RPM	14.20 RPM
SRP007412_cerebellum	0.00 RPM	19.95 RPM
SRP007412_heart	0.00 RPM	26.85 RPM
SRP007412_kidney	0.00 RPM	42.02 RPM
SRP007412_liver	0.00 RPM	33.45 RPM
SRP007412_testis	0.00 RPM	5.13 RPM

ChIP-Seq

Macaca mulatta was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmul_581 retrocopy.

TSS

Macaca mulatta was not studied using FANTOM5 data.

Lab

retro_mmul_581 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_mmul_581 has 0 orthologous retrocopies within eutheria group .

---

Parental genes homology:

Parental genes homology involve 10 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000005380	1 retrocopy	retro_btau_487,
Cavia porcellus	ENSCPOG00000015752	2 retrocopies	retro_cpor_746, retro_cpor_748,
Macaca mulatta	ENSMMUG00000020449	1 retrocopy	retro_mmul_581 ,
Monodelphis domestica	ENSMODG00000019459	1 retrocopy	retro_mdom_1654,
Oryctolagus cuniculus	ENSOCUG00000011406	1 retrocopy	retro_ocun_575,
Otolemur garnettii	ENSOGAG00000011108	1 retrocopy	retro_ogar_2170,
Pteropus vampyrus	ENSPVAG00000010175	1 retrocopy	retro_pvam_633,
Ictidomys tridecemlineatus	ENSSTOG00000010607	1 retrocopy	retro_itri_241,
Tupaia belangeri	ENSTBEG00000008942	3 retrocopies	retro_tbel_1128, retro_tbel_216, retro_tbel_3310,
Tarsius syrichta	ENSTSYG00000001351	1 retrocopy	retro_tsyr_510,