RetrogeneDB ID: retro_mluc_996

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429787:11911132..11912323(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029559
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: WARS
• Ensembl ID: ENSMLUG00000011737
• Aliases: None
• Description: tryptophanyl-tRNA synthetase [Source:HGNC Symbol;Acc:12729]

Sequence

>retro_mluc_996
AGTGGCCCCGGTGCCATGGAAGCTGAAGTGGATTTTGTGGACCCCTGAACTGTACAGAGGAACAGTGCAAATGGCATTGA
CTATGTCAAGCTTATTGTTCTGTTTGGCAGCAGTAACATTGACCAAGAGCTGATAAACAGAATAGAGAGAGCCAGGGGCC
AGAGACCACACCGCTTCCGGCACAGATGCACCTTCTTCTCACACAAAGACATGAACCAAGTCCTCGATGCCTGTGAAAAC
AAGAAGCTGTTTCGCCTGTATATGGGCAGGGGCCCCTCTTCCAACGCCATGCATGTAGGCCACCACATCCCATTCATTTT
CACAAAGTGGCTGCGGTACATGTTTAATGTGCTCTTGCTCATCCAGATGACCGATGACTAGAAGTACCTGTGGAAGACCT
GACCCTGGACCAGGCCTATGGCTACGCCATGGAAAACACCAAGGACATCATCACCTGCGGCTTTGACATCAACAAGCCCA
TCTTCTCTGACCTCGACTACCTGGGGGTGAGCCCAGACTTCTACAAGAACATGGTGAAGATCAGAAGCACATGAACTTCA
ACCAAGTGAAAGGCATTTTTGGCTTTTCAGACAGTGACTTCAAGGGGAAGATCAGCTTTCCTACCATCCAGGTTTCTCCC
TCCTTCAGCAACTCATTCCCACAGAACTTTGGGGGCAAGATGGACGTCCAGGACCTCATCTCCTGTGCCTTCAACCAGGA
TCCTTACTTCAGGATCCTTACAAGATATGTCACACCCAGGATCTGCTATCCTAAACCATCCTGCTACACTCGACCTTCTT
CCCCTCCCTGCAGGGGACTCAGACCCAAAGGAGTGCCAGCAACCCCAACTCCCCCATCTTCCTCACAGACACAGTCAAGC
AGAGCAATCCAAGGTCAACAAGCATGCATTTTCTGGAGGGAGAGACACCATCGAGGAGCACAGGCAGTTTGGGGGAAACT
GCCACGGGGACATGTCCTTCATGTACATGACCTTCTTCCTCGAGGATGAGGAAAAGCTGGAGCAGATCAGGAAGGATTAC
AGCAGTGGAGCCATGCTCACCTGGGAGCTCAGGAAGGAGCTCCTGCAGGACCTGCAGCCCCTCCTTGCGGAGCACCAGGC
CAGGTGCAAGGAGGCCAGGGAGGAGATAGTCAGTGTTCTTGACCCCCAGGAAGCTGTCCTATGACTTTCAA

Alignment

ORF - retro_mluc_996 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.56 %
• Parental protein coverage: 84.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  SGPDATEAEEDFVDPWTVQTSSAKGVDYDKLIVRFGSSKIDKELINRIERATGQRPHRFLRRGIFFSHRD
          SGP.A.EAE.DFVDP.TVQ..SA.G.DY.KLIV.FGSS.ID.ELINRIERA.GQRPHRF..R..FFSH.D
Retrocopy SGPGAMEAEVDFVDP*TVQRNSANGIDYVKLIVLFGSSNIDQELINRIERARGQRPHRFRHRCTFFSHKD

Parental  MNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK-DLTLDQA
          MNQVLDA.ENKK.F.LY.GRGPSS.AMHVGH.IPFIFTKWL...FNV.L.IQMTDD.KYLWK.DLTLDQA
Retrocopy MNQVLDACENKKLFRLYMGRGPSSNAMHVGHHIPFIFTKWLRYMFNVLLLIQMTDD*KYLWK<DLTLDQA

Parental  HGYAVENAKDIIACGFDINKTFIFSDLDYMGMSPGFYRNVVKI-QKHVTFNQVKGIFGFTDSDCIGKISF
          .GYA.EN.KDII.CGFDINK..IFSDLDY.G.SP.FY.N.VKI.QKH..FNQVKGIFGF.DSD..GKISF
Retrocopy YGYAMENTKDIITCGFDINKP-IFSDLDYLGVSPDFYKNMVKI<QKHMNFNQVKGIFGFSDSDFKGKISF

Parental  PAIQAAPSFSNSFPQIFGDKTDVQCLIPCAIDQDPYFR-MTRDVAPRIGYPKPA-LLHSTFFPALQGAQT
          P.IQ..PSFSNSFPQ.FG.K.DVQ.LI.CA..QDPYFR..TR.V.PRI.YPKP..LLHSTFFP.LQG.QT
Retrocopy PTIQVSPSFSNSFPQNFGGKMDVQDLISCAFNQDPYFRILTRYVTPRICYPKPS<LLHSTFFPSLQGTQT

Parental  KMSASDPNSSIFLTDTAKQI-KTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIR
          ..SAS.PNS.IFLTDT.KQ....KVNKHAFSGGRDTIEEHRQFGGNC..D.SFMY.TFFLED..KLEQIR
Retrocopy QRSASNPNSPIFLTDTVKQS<QSKVNKHAFSGGRDTIEEHRQFGGNCHGDMSFMYMTFFLEDEEKLEQIR

Parental  KDYTSGAMLTGELKKELVEVLQPLIAEHQARRKEVTEEIVKEFMTPR-KLSYDFQ
          KDY.SGAMLT.EL.KEL...LQPL.AEHQAR.KE..EEIV.....P..KLSYDFQ
Retrocopy KDYSSGAMLTWELRKELLQDLQPLLAEHQARCKEAREEIV-SVLDPQ>KLSYDFQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_996 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000011737	3 retrocopies	retro_mluc_1007, retro_mluc_665, retro_mluc_996 ,
Otolemur garnettii	ENSOGAG00000032196	3 retrocopies	retro_ogar_1773, retro_ogar_1914, retro_ogar_3506,