RetrogeneDB ID: retro_mluc_1007

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429787:11802719..11804003(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WARS
• Ensembl ID: ENSMLUG00000011737
• Aliases: None
• Description: tryptophanyl-tRNA synthetase [Source:HGNC Symbol;Acc:12729]

Sequence

>retro_mluc_1007
GCAGCCCAGGATGAAAATGATTCTGCACTGAAGAGGCTGTTATTGCTAAAAATGAGCTACAACGTGGCCATGGGGGAGAA
CTACAAGGTGGACTGCCTTCCAGAGAACCTTGTACCTGGGTTAGTGGCCCAGGTGCCACAGAAGCTAAAGTGGATTTTGT
GGACCCCTGAACTGTACAGAGGAACAGTGAAAAAGGCAGTGACTACAACAAGCTCATTGTTCTGTTTGGAAGCAGTAACA
TTGACCAAGAGCTGATAAACAGAATAGAGAGAGCCAGGGGCCAGAGACCACACCGCTTCCTGCACAGATGCACCTTCTTC
TCACACAGAGACATGAACCAAGTCCTCGATGCCTATAAAAACAAGAAGGTGTTTGGCCTGTATATGGGTAGGGGACCCTC
TTCTGAAGCCATGCATGTAGGCCACCACATCCCATTCATTTTCACAAAGTGGCGGCGGTACATGTTCAATGTGCTCTTGC
TCATCCAGATGACCGATGACTAGAAGTACCTGTGGAAGACCTGACCCTGGACCAGGCCTATGGCTACTCCGTGGAAAACG
CCAAGGACATCATCACCTGCGGCTTTGACATCAACAAACCCATCTTCTCTGACCTCGACTACCTGGGGGTGAGCCCAGAC
TTCTACAAGAACATGGTGAAGATCAGAAGCACGTGACCTTCAACCAAGTGAAAGGCATTTTTGGCTTTTCAGACAGTCAT
TGCCAGGGGAAGATCAGCTTTCCTGCCATCCAGGCTGCTCCCTCCTTCAGCAACTCATTCCCACAGATCTTTGGGGGCGA
GATGGATGTCCAGAACCTCATCCCTTGTGCCTTCAACCAGGATCCTTACTTCAGGATGACAAGAGATGTCACACCCAGGA
TCTGCTATCCTAAACCACCCTGCTATACTCGACCTTCTTCCCCTCCCTGCAGGGGACTCAGACCCAAAGCAATGCCAGTG
ACCTCAACTCCCCCATCTTTCCCACAGACACAGCCAAGCAGATCAATCCAAGGTCAACAAGCATGTGTTTTCTGGAGGGA
GAGACACCATCGAGGAGCACAGGCAGTTTTAGGGAAACTGCCACGGGGACATGTCCTTCATGTACATGACCTTCCTCGAG
GATGAGGACAAGCTGGAGCAGATGAGGAAGGATTACAGCAGTGGAGCCATGCTCACCTGGGAGCTTAAGAAGGAGCTGTG
CAGCACCTGCAGCCCCTCCTGGTGGAGCACCAGTCCAGGTACAAGTAGGCTATGGAGGAGATATTCAAAGAATCCTTGAC
ACCC

Alignment

ORF - retro_mluc_1007 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.4 %
• Parental protein coverage: 91.16 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  ASKDELDSAVKKLLSLKMSYKAAMGEDYKADC-PPNNPAPAGDSGPDATEAEEDFVDPWTVQTSSAKGVD
          A..DE.DSA.K.LL.LKMSY..AMGE.YK.DC.P...P.....SGP.ATEA..DFVDP.TVQ..S.KG.D
Retrocopy AAQDENDSALKRLLLLKMSYNVAMGENYKVDC<PSREPC-TWVSGPGATEAKVDFVDP*TVQRNSEKGSD

Parental  YDKLIVRFGSSKIDKELINRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAM
          Y.KLIV.FGSS.ID.ELINRIERA.GQRPHRFL.R..FFSHRDMNQVLDAY.NKK.F.LY.GRGPSSEAM
Retrocopy YNKLIVLFGSSNIDQELINRIERARGQRPHRFLHRCTFFSHRDMNQVLDAYKNKKVFGLYMGRGPSSEAM

Parental  HVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK-DLTLDQAHGYAVENAKDIIACGFDINKTFIFSDL
          HVGH.IPFIFTKW....FNV.L.IQMTDD.KYLWK.DLTLDQA.GY.VENAKDII.CGFDINK..IFSDL
Retrocopy HVGHHIPFIFTKWRRYMFNVLLLIQMTDD*KYLWK<DLTLDQAYGYSVENAKDIITCGFDINKP-IFSDL

Parental  DYMGMSPGFYRNVVKI-QKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFGDKTDVQCLI
          DY.G.SP.FY.N.VKI.QKHVTFNQVKGIFGF.DS.C.GKISFPAIQAAPSFSNSFPQIFG...DVQ.LI
Retrocopy DYLGVSPDFYKNMVKI<QKHVTFNQVKGIFGFSDSHCQGKISFPAIQAAPSFSNSFPQIFGGEMDVQNLI

Parental  PCAIDQDPYFRMTRDVAPRIGYPKP-ALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQI-KTKVNKH
          PCA..QDPYFRMTRDV.PRI.YPKP..LL.STFFP.LQG.QT...ASD.NS.IF.TDTAKQI...KVNKH
Retrocopy PCAFNQDPYFRMTRDVTPRICYPKP<TLLYSTFFPSLQGTQTQSNASDLNSPIFPTDTAKQI<QSKVNKH

Parental  AFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKEL-VEVLQPLIAE
          .FSGGRDTIEEHRQF.GNC..D.SFMY.T.FLED.DKLEQ.RKDY.SGAMLT.ELKKEL.V..LQPL..E
Retrocopy VFSGGRDTIEEHRQF*GNCHGDMSFMYMT-FLEDEDKLEQMRKDYSSGAMLTWELKKEL<VQHLQPLLVE

Parental  HQARRKEVTEEIVKEFMTP
          HQ.R.K...EEI.KE..TP
Retrocopy HQSRYK*AMEEIFKESLTP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1007 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000011737	3 retrocopies	retro_mluc_1007 , retro_mluc_665, retro_mluc_996,
Otolemur garnettii	ENSOGAG00000032196	3 retrocopies	retro_ogar_1773, retro_ogar_1914, retro_ogar_3506,