RetrogeneDB ID: retro_mluc_970

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429786:8407853..8408225(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TMEM50B
• Ensembl ID: ENSMLUG00000012388
• Aliases: None
• Description: None

Sequence

>retro_mluc_970
ATGGCAGGCTTCCTGGATAACATTCATTGGCCAGAGTGGGAATGCATTGACTGGAGTGAGCGGAGGAATGCCGTGGCCTC
TGTGGTTGCAGGCATATTGTTCTCCACAGGCTGGTGGGTGATGATCAACACCGCTGTGGTGTACGCGAAGCCTGAGCAGG
TGAACCCCACCTTCCACACCTGCGGGGTGTTCTCCACACTGGCCTTCTTCATGATAAATGCGGTATACAATGCCCAGGTG
AGAGGCGACAGCTATGAGAGCGGCTGTTTGGGAAGAACAGATGCTCGCGTCTGGCTCTTCATTGGCTTCATGTTGATGTT
CTTGTCACTCATTGCTTCCATGTGGATTCTTTTTGGTGCCTATGTTACCCAG

Alignment

ORF - retro_mluc_970 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.13 %
• Parental protein coverage: 78.48 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAGFLDNVRWPEWECIDWSERRNAVASVVAGVLFSAGWWVMIDAAVVYAKPEQLNPAFHTCGVFSTLAFF
          MAGFLDN..WPEWECIDWSERRNAVASVVAG.LFS.GWWVMI..AVVYAKPEQ.NP.FHTCGVFSTLAFF
Retrocopy MAGFLDNIHWPEWECIDWSERRNAVASVVAGILFSTGWWVMINTAVVYAKPEQVNPTFHTCGVFSTLAFF

Parental  MINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVTQ
          MINAV.NAQVRGDSYESGCLGRT.ARVWLFIGFMLMF.SLIASMWILFGAYVTQ
Retrocopy MINAVYNAQVRGDSYESGCLGRTDARVWLFIGFMLMFLSLIASMWILFGAYVTQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_970 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003928	1 retrocopy	retro_chof_422,
Gorilla gorilla	ENSGGOG00000034844	1 retrocopy	retro_ggor_1487,
Myotis lucifugus	ENSMLUG00000012388	1 retrocopy	retro_mluc_970 ,
Nomascus leucogenys	ENSNLEG00000003887	1 retrocopy	retro_nleu_2077,
Pan troglodytes	ENSPTRG00000013869	1 retrocopy	retro_ptro_1379,
Ictidomys tridecemlineatus	ENSSTOG00000023740	1 retrocopy	retro_itri_678,