RetrogeneDB ID: retro_mluc_928

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429783:11676266..11677062(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FBXO6
• Ensembl ID: ENSMLUG00000006843
• Aliases: None
• Description: None

Sequence

>retro_mluc_928
CTGGTCAGCATCAATGAACTGCATGAGAACATCCTGCTGGAGGTATTCACATACGTGCCTGCCCATCAGCTGGTATTGGA
CTGCTGCCCTGTCTGCAGCCTCTGGCTCAACCCTCATCAACCTTGTGACCCTCTGGAAACACAAGAGCCTGCGTGAAGGC
TTCATCATCGAGGACTGCGATGAGCCTGTGTCTGACTGGAAGATTTTTTACTTTTTGTGCAGCCTCCACAGGAACCTCCT
ACGCAACCCATGTGCTGAAGAGGGTCTGAGATCCTGGCAAATCGACTACAATGGGGGGGACCACTGGAAGGTGGACAGCT
TACCTGGAGGTCATGGGCAAGTTTTTCCTGACTCCAAGGTCAGGAAGTACTTCGTCACATCCTTTGGATTATGCCTCAAG
TCCTAGATGGTGGACCTCAAAGCTGAGGGCTACTGGGAGGAACTGATGAACATAATCTGGCCTGACATCGTGGTGAAGAA
CTGGTTCGCCGCCAGAGCAGACTGTGGCTGCACCTACAACATCCGAGTACAGCTGGTCTCAGCCAACTACATCGCCTTGG
CCTCCTTCGAGCCCCCACCTGTGACCATCCAGCAGTGGAACAATGCCCAGTGGACAGAGGTCTCTCACACCTTCTCAGAT
TACCCTCCAGGCGTCCGCCACATCCTCATCCAGCATGGGGGCAAAGACACCCAGTTCTGGGCAGGCTGGTATGGGCCCCG
TGTCACCAAGAGCAGCATCATCATCAGCCCTAAGACGCCTGGGAACCCAGAGGCCTCCACAACTCAGCCCAAGACC

Alignment

ORF - retro_mluc_928 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.71 %
• Parental protein coverage: 88.93 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LLSINELPENILLEVFIYVPARQLVLDCRPVCSLW-RYLIDLMTLWKRKSLREGLISKDYDEPVSDWKIF
          L.SINEL.ENILLEVF.YVPA.QLVLDC.PVCSLW...LI.L.TLWK.KSLREG.I..D.DEPVSDWKIF
Retrocopy LVSINELHENILLEVFTYVPAHQLVLDCCPVCSLW>STLINLVTLWKHKSLREGFIIEDCDEPVSDWKIF

Parental  YFLCILRRNLLRNPCAEEGMRSWKIDRNGGNHWKVESLPGGHGQGFPDSKVKKYFVTSYELCLKSQMVDL
          YFLC.L.RNLLRNPCAEEG.RSW.ID.NGG.HWKV.SLPGGHGQ.FPDSKV.KYFVTS..LCLKS.MVDL
Retrocopy YFLCSLHRNLLRNPCAEEGLRSWQIDYNGGDHWKVDSLPGGHGQVFPDSKVRKYFVTSFGLCLKS*MVDL

Parental  KAEGYWEELMDTIRPDIVVKDWFAARADCGCTYSIRVQLVSANYIVLASFEPPPVTIEQWSDAQWREVSH
          KAEGYWEELM..I.PDIVVK.WFAARADCGCTY.IRVQLVSANYI.LASFEPPPVTI.QW..AQW.EVSH
Retrocopy KAEGYWEELMNIIWPDIVVKNWFAARADCGCTYNIRVQLVSANYIALASFEPPPVTIQQWNNAQWTEVSH

Parental  TFSDYPPGVRHILFQHGGKDTQYWAGWYGPRVTNSSITISPKTTRSPAASTTQPET
          TFSDYPPGVRHIL.QHGGKDTQ.WAGWYGPRVT.SSI.ISPKT...P.ASTTQP.T
Retrocopy TFSDYPPGVRHILIQHGGKDTQFWAGWYGPRVTKSSIIISPKTPGNPEASTTQPKT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_928 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000013250	1 retrocopy	retro_cjac_583,
Myotis lucifugus	ENSMLUG00000006843	1 retrocopy	retro_mluc_928 ,