RetrogeneDB ID: retro_mluc_9

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430019:1580756..1582166(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022275
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002172
• Aliases: None
• Description: None

Sequence

>retro_mluc_9
ATGTCCCGCCGCAAGGCCGGCTGCATGCCCTGCCGAGTAGACCCAGAGCCCGCCGCCCACACCGACAACGAGAAGGAGAT
GGGGGACCTGGTCATCGACGTGAAGCCCGAGCCACATCCGTGGCCCCTACAGGCCGCGGGGCTGCAGCGGGGTTCTCCAA
AGGAAGTGCCCGCGCCGGGCCGCCTCCAGGGCGCACCCCGCTCCTGCCCTACCCTGGTGCCCGCCGCCGGTACCCTCCTC
GCCCTCGGCGTGCAGAACCAGTCGGCGCCGAGGACTTCTCTGGTCCCTGATCCTCACGCCCGCCAGCCCTGGACGGACAA
ACACCCAGATACGTTGACCTGCGGCCTCTGCCTGCAGACCGTCCCGCTGAAGGCCATCGCGGCTTTCATGGACCACAAGC
AGCAGGGCTGTCCGCCCTCTAGAGGCCCCAGCCCTGGCCCGGACTCACAACTTGAGAACCTGAAGGCCTTGACTTGCCTC
CGCTGTGGCCGACAATTCACCGAGGGCTGGGAACTGCTGCGCCATGCCCAGTGGGACCACGGACTGTCCATCTGCCTGAC
GGAATCCGAGGCCCCAGAGACTCCTCTGCTGGGCCTGGCAGAGGTGATGTCAGCGGTGGTGGGGCAGGGAGTGGAGGCCA
AGGGCTCCCGGGCGCACAGCCTCCCCCGGCGGAGCCCCACCTGCCCGGTGTGCATGAAGACCCTCAGCTCCTTCAGCAGC
CTCAAGGTGCACATGCGCTCGCACACGGGCGAGCGGCCCTACGCCTGTGACCAGTGTTCTTACGCCTGTGCCCAGAGCAG
CAAGCTCCACCGCCACAAGAAGACCCACCAGCTGCTGCAGCCTCAGAGCCCCTACACGGCTAAGGCCAGTCAGGAACAGG
CCTCACCTGCCCCTCCGGAGCCAGCCGCCCGTGCCGCTGCCCCAGCCGGGACTCTCCTGTGCAGCCATGAAGGGGCCGGA
GCTGCGGACACAGCAGCCGTGCAGGAACCTGGGGCCCCAGGTGGTGGAGCTCAGGCTGGTCCTGGTGGGGACAGTTGGGG
CGACGCCATCAAGGAAGAGAGAATCAACTCTGCCCAGATCCCAGAGAAGTTTCCTAAGAAGACTCCAAAGACAGCGGGCC
AGTGCCAAGGGCCCGGAGGCAGCTGTGAGTTCTGTGGGAAACGTTTCACCAACAGCAGCAACCTGACTGTGCACCGGCGC
TCACACACCGGGGAGCGGCCCTATACCTGCGAGCTCCGCCCCTATGCCTGTGCCCAGAGCAGCAAGCTGAACCGCCACCG
CCGCATACACGGTCTGGGGCCCGGCGGTGCCCGCTTTGAGTGCCCCCACTGCCCTGTGCCCTTCGGCCTGCGGGCCACCC
TGGACAAACACCTGCGGCAGAAGCACCCCCAAGCAGGCGGGGAGGCCTGA

Alignment

ORF - retro_mluc_9 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.58 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSRRKAGCMPRRVDPEPAAHTDDDETEMGDLVIDVKPEPHSWPLQAARLQRGSPKEVPAPGRLEGAPRSC
          MSRRKAGCMP.RVDPEPAAHTD..E.EMGDLVIDVKPEPH.WPLQAA.LQRGSPKEVPAPGRL.GAPRSC
Retrocopy MSRRKAGCMPCRVDPEPAAHTDN-EKEMGDLVIDVKPEPHPWPLQAAGLQRGSPKEVPAPGRLQGAPRSC

Parental  PSLMPAVGTLLALGLQNQPAPWTSLVPNPHDRQPWTDKHPDTLTCGLCLQTFPLKAITAFMDHKKQGCQP
          P.L.PA.GTLLALG.QNQ.AP.TSLVP.PH.RQPWTDKHPDTLTCGLCLQT.PLKAI.AFMDHK.QGC.P
Retrocopy PTLVPAAGTLLALGVQNQSAPRTSLVPDPHARQPWTDKHPDTLTCGLCLQTVPLKAIAAFMDHKQQGCPP

Parental  SRGPSPCPDSELEDLKALTCLRCGRQFTEAWKLLRHAQWDHGLSIYQTESEAPEAPLLGLAEVAAAMSAV
          SRGPSP.PDS.LE.LKALTCLRCGRQFTE.W.LLRHAQWDHGLSI..TESEAPE.PLLGLAEV...MSAV
Retrocopy SRGPSPGPDSQLENLKALTCLRCGRQFTEGWELLRHAQWDHGLSICLTESEAPETPLLGLAEV---MSAV

Parental  VGQEVEAKGSQANSLPRRSPTCSVCMKTLSSFSNLKVHMRSHTGERPYACDQCSYACAQSSKLNRHKKTH
          VGQ.VEAKGS.A.SLPRRSPTC.VCMKTLSSFS.LKVHMRSHTGERPYACDQCSYACAQSSKL.RHKKTH
Retrocopy VGQGVEAKGSRAHSLPRRSPTCPVCMKTLSSFSSLKVHMRSHTGERPYACDQCSYACAQSSKLHRHKKTH

Parental  QQLQPQSPYTAKASQEQASAAPPEPAAHAAAPARTLLCSREGAGAADTAGVQEPGAPGGGAQAGPGGDGC
          Q.LQPQSPYTAKASQEQAS.APPEPAA.AAAPA.TLLCS.EGAGAADTA.VQEPGAPGGGAQAGPGGD..
Retrocopy QLLQPQSPYTAKASQEQASPAPPEPAARAAAPAGTLLCSHEGAGAADTAAVQEPGAPGGGAQAGPGGDSW

Parental  GVAIKKERINSAQIPEKLPKKTPKTVGKSHGPGGSCEFCGKRFTNSSNLTVHRRSHTGERPYTCELCPYA
          G.AIK.ERINSAQIPEK.PKKTPKT.G...GPGGSCEFCGKRFTNSSNLTVHRRSHTGERPYTCEL.PYA
Retrocopy GDAIKEERINSAQIPEKFPKKTPKTAGQCQGPGGSCEFCGKRFTNSSNLTVHRRSHTGERPYTCELRPYA

Parental  CAQSSKLNRHRRMHGLGPGGARFECPHCRVPFGLRATLDKHLRQKHPQAGGEA
          CAQSSKLNRHRR.HGLGPGGARFECPHC.VPFGLRATLDKHLRQKHPQAGGEA
Retrocopy CAQSSKLNRHRRIHGLGPGGARFECPHCPVPFGLRATLDKHLRQKHPQAGGEA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_9 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002172	4 retrocopies	retro_mluc_2424, retro_mluc_45, retro_mluc_70, retro_mluc_9 ,