RetrogeneDB ID: retro_mluc_2424

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430367:34055..34789(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002172
• Aliases: None
• Description: None

Sequence

>retro_mluc_2424
AAGGCCGCGGGGGCTGCGGCGGGTTCCCCAGAGGAGGTGCCCACGCCGGGCCGCCTCGAGGGCGCACCCGCTCCTCCCCT
ATCCCGGTGCCCGCCCCCTCCCGTTCCCTCCTCGCCCAGATCTTGCAGAACCAGTGGGCGCCGTGGACTCCTCTGGTCCC
TGATCCTCACAACCGCCAGCCCCGGACTGACAGATACCCCGATATCTTGACCTGCGGCCTCTGCCAGCAGACCTTCCTGC
TGGAAGCCATCACGGCTTTCGTGGACCACAAGAAGCAGGGCTGTCAGCCCTCGCGCGGCCCCAGACCTGGCTCGGACTCA
GAACTTGAGAACCTGAAGGCCTTGACTTGCCTCCACTGTGGCCGACAGTTCACCAAGGCCCGGAGGCTGCTGCGCCATGC
CCAGTGGGACCACGGACTGTCCATCTACCAGACGGAACCCGAGGCCCCAGAGACTCCGCTGCTGGGCCTGGCCGAGGTGG
CTACAGCCAGGTTAGCAGCGGTGGGGCAGGAAGTGGAGGCCGAGGGCTCCCGGGGGAACAGCCTCCAAAGGGAGAGCCCC
ACCTGCCCTGTGTGCCTGAAGACCTTCAGCTCCTTCACCAGCCTCAAGGGGCACATGCGCCTGCACACGGGCGAGCGGCC
CTATGCCTGTGACCAGTAGTGCCCTTACACCTGTGCCCAGAGCAGCAGCCTGACTGTGCACCGGCGCTCACTCACCGGGG
AGCGGCCCTATACC

Alignment

ORF - retro_mluc_2424 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.08 %
• Parental protein coverage: 52.01 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QAARLQRGSPKEVPAPGRLEGAP-RSCPSLMPAVG-TLLALGLQNQPAPWTSLVPNPHDRQPWTDKHPDT
          .AA....GSP.EVP.PGRLEGAP.RS.P...PA....LLA..LQNQ.APWT.LVP.PH.RQP.TD..PD.
Retrocopy KAAGAAAGSPEEVPTPGRLEGAP<RSSPIPVPAPSRSLLAQILQNQWAPWTPLVPDPHNRQPRTDRYPDI

Parental  LTCGLCLQTFPLKAITAFMDHKKQGCQPSRGPSPCPDSELEDLKALTCLRCGRQFTEAWKLLRHAQWDHG
          LTCGLC.QTF.L.AITAF.DHKKQGCQPSRGP.P..DSELE.LKALTCL.CGRQFT.A..LLRHAQWDHG
Retrocopy LTCGLCQQTFLLEAITAFVDHKKQGCQPSRGPRPGSDSELENLKALTCLHCGRQFTKARRLLRHAQWDHG

Parental  LSIYQTESEAPEAPLLGLAEVAAAMSAVVGQEVEAKGSQANSLPRRSPTCSVCMKTLSSFSNLKVHMRSH
          LSIYQTE.EAPE.PLLGLAEVA.A..A.VGQEVEA.GS..NSL.R.SPTC.VC.KT.SSF..LK.HMR.H
Retrocopy LSIYQTEPEAPETPLLGLAEVATARLAAVGQEVEAEGSRGNSLQRESPTCPVCLKTFSSFTSLKGHMRLH

Parental  TGERPYACDQ-CSYACAQSSKLNRHKKTHQQLQPQSPYT
          TGERPYACDQ.C.Y.CAQSS.L..H......L....PYT
Retrocopy TGERPYACDQ*CPYTCAQSSSLTVHRRS---LTGERPYT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2424 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002172	4 retrocopies	retro_mluc_2424 , retro_mluc_45, retro_mluc_70, retro_mluc_9,