RetrogeneDB ID: retro_mluc_814

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429777:10060860..10061722(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000014336
• Aliases: None
• Description: None

Sequence

>retro_mluc_814
GGCCCCTCCAGGTACAAGGTGGGCCCCATGGCTGAGAAGTGTGACTGCCACTGCTGCAGGGACCCCCTGCGGGGGAAGAA
GTACGTGGAGAAGGATGGCCACCACCGCTGCCTGAAGTGCTTTGACAAGTTCTGCGCCAACACCTGTGTGGAGGGCCCCA
AGCCCATCGGTGCGGACCCCGAGGAGGTGCACTACAAGAACCGCTGCTGGCACGACACCTGCGTCCGCTGTGCCAAGTGC
CAGCACCCCTTGGCCAACGAGACTTTTATGCCCAAGGACAACAAGATCCTGTGCAACAAGTGCACCACTCGGGAGGACTC
CCCAAGTGCAAGGGCCGCTTCAAGCCAATCGTGGCAGGAGATGGGAATGTGGAGCACAAGGGGACCGTCTGGCACAAAGA
CTGCTTCACCGCAGCAACTGCAAGCAAGTCATCGGCTCTGGAAGCTTCTTCCCGAAAGGGGAGGACTTCTGCATGATTTG
CCATGAGTCCAAACTTGCCAAGCTCTGCGTGAAGTGCAACAAGGCCATCCCATCTGGAGGAATCACTTACCAGGATCAGC
CCTGGCATGCCGAGTGCTTTGTGTGTGTTACCTGCTCTAAGAAGCTCTCTGGGCAGCGTTTCACCGCTGTGGAGGACCAG
TATTACTGCGTGGATTGCTACAAGAACTTTGTGGCCAAGAAGTGTGCTGGATGCAAGAACCCCATCACTGGGTTTGGTAA
AGGCTCCAGCGTGGTCACCTATGAAGGACAATCCTGGCACGACTACTGCTTCCACTGCAAAAAATGCTCCGTGAATCTGG
CCAACAAGTGCTTTGTTTTCCATCAGGAGCATGTGTACTGTCCCGACTGTGCCAAAAAGCTG

Alignment

ORF - retro_mluc_814 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.38 %
• Parental protein coverage: 97.64 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GPSRYKVGTMAEKFDCHYCRDPLQGKKYVEKDGHHCCLKCFDKFCANTCVECRKPIGADSKEVHYKNRYW
          GPSRYKVG.MAEK.DCH.CRDPL.GKKYVEKDGHH.CLKCFDKFCANTCVE..KPIGAD..EVHYKNR.W
Retrocopy GPSRYKVGPMAEKCDCHCCRDPLRGKKYVEKDGHHRCLKCFDKFCANTCVEGPKPIGADPEEVHYKNRCW

Parental  HDTCFRCAKCLHPLANETFMSKDNKILCNKCTTREDSP-KCKGCFKPIVAGDQNVEYKGTVWHKDCFTC-
          HDTC.RCAKC.HPLANETFM.KDNKILCNKCTTREDSP.KCKG.FKPIVAGD.NVE.KGTVWHKDCFT..
Retrocopy HDTCVRCAKCQHPLANETFMPKDNKILCNKCTTREDSP<KCKGRFKPIVAGDGNVEHKGTVWHKDCFTA<

Parental  SNCKQVIGSGSFFPKGEDFYCVTCHESKFAKHCVKCNKAITSGGITYQDQPWHAECFVCVTCSKKLAGQR
          SNCKQVIGSGSFFPKGEDF.C..CHESK.AK.CVKCNKAI.SGGITYQDQPWHAECFVCVTCSKKL.GQR
Retrocopy SNCKQVIGSGSFFPKGEDF-CMICHESKLAKLCVKCNKAIPSGGITYQDQPWHAECFVCVTCSKKLSGQR

Parental  FTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQE
          FTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVV.YEGQSWHDYCFHCKKCSVNLANK.FVFHQE
Retrocopy FTAVEDQYYCVDCYKNFVAKKCAGCKNPITGFGKGSSVVTYEGQSWHDYCFHCKKCSVNLANKCFVFHQE

Parental  HVYCPDCAKKL
          HVYCPDCAKKL
Retrocopy HVYCPDCAKKL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_814 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000015644	2 retrocopies	retro_dord_299, retro_dord_722,
Homo sapiens	ENSG00000022267	1 retrocopy	retro_hsap_2878,
Gorilla gorilla	ENSGGOG00000010054	1 retrocopy	retro_ggor_1994,
Microcebus murinus	ENSMICG00000009342	1 retrocopy	retro_mmur_1438,
Myotis lucifugus	ENSMLUG00000014336	2 retrocopies	retro_mluc_311, retro_mluc_814 ,
Macaca mulatta	ENSMMUG00000007922	1 retrocopy	retro_mmul_1458,
Mus musculus	ENSMUSG00000023092	1 retrocopy	retro_mmus_51,
Nomascus leucogenys	ENSNLEG00000002560	1 retrocopy	retro_nleu_618,
Pongo abelii	ENSPPYG00000020761	1 retrocopy	retro_pabe_2382,
Rattus norvegicus	ENSRNOG00000000875	1 retrocopy	retro_rnor_2514,