RetrogeneDB ID: retro_mluc_772

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429774:13451248..13452346(-)
• Located in intron of: ENSMLUG00000006920

Retrocopy information

• Ensembl ID: ENSMLUG00000006952
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CDC16
• Ensembl ID: ENSMLUG00000015888
• Aliases: None
• Description: None

Sequence

>retro_mluc_772
TCTGTAGTAATGGAAAAAGATCCTTTCCATGCAAATTGTTTACCTGTACATATAGGGACACTTGTGGAGCTGAATAAAGC
AAATGAACTTTTCTATCTTTCTCATAAATTGGTGGATTTATATCCTAGCAACCCTGTTTCTTGGTTTGCAATGGGATGCT
ATTATTTCATGGTTGATCATAAGAATGAACATGCCAGAAGATATCTCAGTAAAGCTACGACACTTGAGAAGACCTATGGG
CCTGCGTGGATAGCATATGGACATTCATTTGCAGTTGAGAGTGAACATGATCAAGCAATGGCTGCTTACTTCACAGCAGC
ACAGCTGATGAAAGGGTGTCATTTGCCAATGCTCTATATTGGATTAGAATATGGATTAACCAGTAACTCAAAATTGGCTG
AAAGATTCTTTGGCCAGGCTCTAAGCATTGCACCAGAAGATCCTTTTGTTATGCATGAAGTTGGCGTGGTTGCATTTCAA
AATGGAGAATGGAAAACAGCAGAAAAATGGTTTCTTGATGCTTTGGAAAAAATTAAAGCAATTGGGAATGAGGTAACTGT
TGACAAATGGGAACCTTTGTTGAACAACTTGGGGCATGTCTGCAGAAAACTTAAAAAGTATGCTGAGGCACTGGATTATC
ACTGTCAGGCATTGGTGTTAATTCCGCAAAATGCATCCACCTATTCTGCCATAGGGTATATCCATAGTCTGATGGGCAAC
TTTGAAAATGCTGTGGACTATTTCCATACAGCCCTTGGACTTAGGCGAGATGATACATTTTCTGTTACAATGCTTGGTCA
TTGCATTGAAATGTACATTGGTGATTCTGAAGCTTATATTGGAGCAGACATTAAAGACAAATTAAAATGTTATGACTTTG
ATGTGCATACAATAAAGACACTAAAAAACATTATTTCACCTCCGTGGGATTTCAGGGAATTTGAAGTAGAAAAACAGACT
ATAGAAGAAACAGGGCTTACACCACTGGAAACCTCAAGGAAAACTCCAGATTCCAGACCTTCTTTGGAAGAAACCTTTGA
AATTGAAATGAATGAAAGTGACATGATGCTAGAGACATCTATGTCAGACCACAGTACG

Alignment

ORF - retro_mluc_772 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.09 %
• Parental protein coverage: 59.13 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SVVMEKDPFHANCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS
          SVVMEKDPFHANCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA.GCYY.MV.HKNEHARRYLS
Retrocopy SVVMEKDPFHANCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAMGCYYFMVDHKNEHARRYLS

Parental  KATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFGQA
          KATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT.NSKLAERFFGQA
Retrocopy KATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTSNSKLAERFFGQA

Parental  LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA
          LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA
Retrocopy LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA

Parental  LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYI
          LDYH.QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYI
Retrocopy LDYHCQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYI

Parental  GADIKDKLKCYDFDVHTMKTLKNIISPPWDFREFEVEKQTTEETGLTPLETSRKTPDSRPSLEETFEIEM
          GADIKDKLKCYDFDVHT.KTLKNIISPPWDFREFEVEKQT.EETGLTPLETSRKTPDSRPSLEETFEIEM
Retrocopy GADIKDKLKCYDFDVHTIKTLKNIISPPWDFREFEVEKQTIEETGLTPLETSRKTPDSRPSLEETFEIEM

Parental  NESDMMLETSMSDHST
          NESDMMLETSMSDHST
Retrocopy NESDMMLETSMSDHST

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_772 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000019010	1 retrocopy	retro_cjac_1884,
Microcebus murinus	ENSMICG00000012596	1 retrocopy	retro_mmur_301,
Myotis lucifugus	ENSMLUG00000015888	1 retrocopy	retro_mluc_772 ,