RetrogeneDB ID: retro_mluc_618

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:3503706..3504662(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ARHGAP1
• Ensembl ID: ENSMLUG00000017628
• Aliases: None
• Description: None

Sequence

>retro_mluc_618
GCTATGGACCCACTTTCAGAGCTGCAGGATGACTTGACCTTGGATGACACCAGTCAGGCTCTGAACTAGCTGAAGCTAGT
CTCCATTGATGAGAAGAACTGGCCCTCGGATAAAATGCCCGACTTTCCCAAGTCAGATGACTCCAAAAGCAGCTCCCCAG
AACCTGTCACACACCTGAAGTGGGATAACCCTTACTACATCGCCAGGCACCAGAATGTGGAGGTGGCAGGAGATGACAAG
TATGTGCAAAAGATCATTATGTTTAGTGCCTGCTGAATGCCTCCCAGCCACCAGCTGGACCACAGTAAGCTCCTGGGGTA
CCTGAAGCACACCCTGGACCAGTACATGGAGAGTGATTACACACTGCTTACCTGCACCATGGTCTGACCAGTGACAACAA
GCCCTCCTTTAGCTGGCTCCGGGATGCCTACTGGGAGTTTGACCGAAAGTACAAGAAGAACATCAAGGCCCTGTACATCG
TGTACCCTACCATGTTCATCAAGACCCTGCTCATCCTCTTTAAGCTCCTCATTAGCTTCAAGTTTGGGCAGAAGATGTTC
TATGTGAATTACATGAGTGAGTTGAGCGAGAACGTGAAGCTAGAGCAACTAGGGATCTCTTGCCAAGTGCTCAGGTAGGA
TGACTTCCTGAAGTCCACACAGAAGAGCCCTGCAACAGCCCCCAAGCCCATGTCACCATGGCCCCCTGTGCCCAACCAGA
AGTTTGGGGTCTCACTGCAGCATCTCCAGAAGAAGAACTCAGAGCAGGAGCCCATTCCTCTCGTGCTCCGTGAGACCATT
GCCCACCTGCAGGCCCATGCTCTCACCTCTGAAGGGATTTTCCGGAGGTCCGCCAACATCCAAGTTGTACAAGAGGTGCA
GCAGAAGTATAACATGGGGCTGCCTGTGGACTTCGACCAGTACAATGACTAAAACCTGCCAGTGGTCATTCTCAAG

Alignment

ORF - retro_mluc_618 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.24 %
• Parental protein coverage: 67.36 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AMDPLSELQDDLTLDDTSQALNQLKLASIDEKNWPSDDMPDFPKSDDSKSSSPEPVTHLKWDDPYYDIAR
          AMDPLSELQDDLTLDDTSQALN.LKL.SIDEKNWPSD.MPDFPKSDDSKSSSPEPVTHLKWD.PYY.IAR
Retrocopy AMDPLSELQDDLTLDDTSQALN*LKLVSIDEKNWPSDKMPDFPKSDDSKSSSPEPVTHLKWDNPYY-IAR

Parental  HQIVEVADLGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTLDQYVESDYTLL-YLHHGLTSDNKPS
          HQ.VEVA..GDDKY..KII.FSAC.MPPSHQLDHSKLLGYLKHTLDQY.ESDYTLL.YLHHGLTSDNKPS
Retrocopy HQNVEVA--GDDKYVQKIIMFSAC*MPPSHQLDHSKLLGYLKHTLDQYMESDYTLL<YLHHGLTSDNKPS

Parental  FSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILFKPFISFKFGQKIFYVNYLSELSEHVKLEQLGI
          FSWLRDAY.EFDRKYKKNIKALYIV.PTMFIKTLLILFK..ISFKFGQK.FYVNY.SELSE.VKLEQLGI
Retrocopy FSWLRDAYWEFDRKYKKNIKALYIVYPTMFIKTLLILFKLLISFKFGQKMFYVNYMSELSENVKLEQLGI

Parental  PRQVLKYDDFLKSTQKSPATAPKPMPPRPPLPNQQFGVSLQHLQEKNPEQEPIPLVVRETIAHLQAHALT
          ..QVL..DDFLKSTQKSPATAPKPM.P.PP.PNQ.FGVSLQHLQ.KN.EQEPIPLV.RETIAHLQAHALT
Retrocopy SCQVLR*DDFLKSTQKSPATAPKPMSPWPPVPNQKFGVSLQHLQKKNSEQEPIPLVLRETIAHLQAHALT

Parental  TEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNDLHLPAVILK
          .EGIFRRSAN.QVV.EVQQKYNMGLPVDFDQYND..LP.VILK
Retrocopy SEGIFRRSANIQVVQEVQQKYNMGLPVDFDQYND*NLPVVILK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_618 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000017628	1 retrocopy	retro_mluc_618 ,
Mus musculus	ENSMUSG00000027247	1 retrocopy	retro_mmus_1179,