RetrogeneDB ID: retro_mluc_469

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02068033:223..1304(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EZR
• Ensembl ID: ENSMLUG00000001931
• Aliases: None
• Description: None

Sequence

>retro_mluc_469
CTGGAGTTCTCCATCCAGCCAGACACGCCAGGAAAGCTGCTTTTTGATCAGGTGGTTAAGACAATCAGCCTTTGGGAAGT
GTGGTGCTTCGGCCTCCAGTGTGTAGATAATAAAGGATTTCCCACCTGGTTGAAACTTGATAAAAGGTGTCGGCCCAGGA
GGTCAGGAAGGAGAATCCGCTGCAGTTCAAGTTCAGGGCCAAGTTCTGCCCCGAAGATGTGTCTGAGGAGCTCATCCAGG
ACATTATGCAGAAGCTTTTCTTCGTCCACGTGAAGGAGGGCATTCTGAGCGATGAGATTTACTGCCCTCCTGAGACTGTG
GTGCTCCTTGGCTCCTACGCCATGCAGGCCAAGTTTGGAGACTATAACAAAGAAATTCACAAGTATGGGTACCTCAGCTC
CGAGCGGCTGATCCCCCAGAAAGTCATTGAGCAGCACACGCTCACCAGGGACCAGTGGGAGGACCGGATCCAGGTATGGC
ACGTGGGGCACCGCGGGATGCTCAAAGGTAGTGCCATGCTGGAGTGCCTGAAGATTGCCCAGGACCTGGAAATGTACAGA
ATCAACTATTTTGAGATAAAAAAAAATAATAACGGAACTGACTGTGGCTTGTAGTGGATGCCCTGGGACTAAATATTTAT
GAGAAAGTTGATAATTTGACCCCAAAGATTGGCTTCCCATGGAGTGAGATCAGGAACATCCATTTCAATGACAAGAACTT
TGTCATCAAGCCCATCGACAAGAAGGCGCCTGACTTCGTCTTCTATGCCCCCCGCCTGCACATCAACAAGCGGATCCTGC
AATTCCACCTGGGGAACCACGAGCTATACATGTGCTGCAAAAAGCCCGACAACATCGAGGTGCAGCAGATGAAGGCCCAG
GCCCGCAAGGAGAAGCACCAGAAGCAGCTGGAAACTAAGAAGAAGAGGCGAGAGACTGTGGAGAGAGAGAAGGAGCAGAT
GATGCGGGAGAAGGAGGAGCTGATGCTCAGGCTCCAGGACTATGAGCAGAAGACCAAGAAGGCCGAGAAAGAGCGCTCGG
ACCAGATCCAGAGGGCCCTGCAGCTGGAGGAGGAGCGGGCG

Alignment

ORF - retro_mluc_469 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.15 %
• Parental protein coverage: 75.1 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LEFAIQPNTTGKQLFDQVVKTIGLREVWYFGLQYVDNKGFPTWLKLDK-KVSAQEVRKENPLQFKFRAKF
          LEF.IQP.T.GK.LFDQVVKTI.L.EVW.FGLQ.VDNKGFPTWLKLDK.KVSAQEVRKENPLQFKFRAKF
Retrocopy LEFSIQPDTPGKLLFDQVVKTISLWEVWCFGLQCVDNKGFPTWLKLDK<KVSAQEVRKENPLQFKFRAKF

Parental  YPEDVPEELIQDITQKLFFLQVKEGILSDEIYCPPETAVLLGSYAVQAKFGDYNKEMHKSGYLSSERLIP
          .PEDV.EELIQDI.QKLFF..VKEGILSDEIYCPPET.VLLGSYA.QAKFGDYNKE.HK.GYLSSERLIP
Retrocopy CPEDVSEELIQDIMQKLFFVHVKEGILSDEIYCPPETVVLLGSYAMQAKFGDYNKEIHKYGYLSSERLIP

Parental  QRVMDQHKLTRDQWEDRIQVWHAENRGCSTNRDSAMLEYLKIAQDLEMYGINYFE-IKNKKGTD-LWLGV
          Q.V..QH.LTRDQWEDRIQVWH...RG......SAMLE.LKIAQDLEMY.INYFE......GTD.LWL.V
Retrocopy QKVIEQHTLTRDQWEDRIQVWHVGHRGML--KGSAMLECLKIAQDLEMYRINYFEXXXXNNGTD<LWLVV

Parental  DALGLNIYEKEDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILQLCMGNHEL
          DALGLNIYEK.D.LTPKIGFPWSEIRNI.FNDK.FVIKPIDKKAPDFVFYAPRL.INKRILQ...GNHEL
Retrocopy DALGLNIYEKVDNLTPKIGFPWSEIRNIHFNDKNFVIKPIDKKAPDFVFYAPRLHINKRILQFHLGNHEL

Parental  YMRRRKPDTIEVQQMKAQAREEKHQKQLE--RQQLETEKKRRETVEREKEQMMREKEELMLRLQDYE-QK
          YM...KPD.IEVQQMKAQAR.EKHQKQLE......ET.....E...REKE..M.............E...
Retrocopy YMCCKKPDNIEVQQMKAQARKEKHQKQLETKKKRRETVEREKEQMMREKEELMLRLQDYEQKTKKAEKER

Parental  TKKAEKELSDQIQRA
          .......L.....RA
Retrocopy SDQIQRALQLEEERA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_469 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000013301	1 retrocopy	retro_ggor_690,
Myotis lucifugus	ENSMLUG00000001931	3 retrocopies	retro_mluc_2037, retro_mluc_358, retro_mluc_469 ,
Monodelphis domestica	ENSMODG00000007642	1 retrocopy	retro_mdom_78,