RetrogeneDB ID: retro_mluc_422

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02062425:13580..15228(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CTNNA1
• Ensembl ID: ENSMLUG00000012995
• Aliases: None
• Description: None

Sequence

>retro_mluc_422
ATGACTGCAGTTCACACAGGCAACATAAACTTCAAATGGGACCCCAAAAGTCTAGAGATCAGGACTCTGGCAGTTGAAAG
ACTGTTGGAGCCTCTTGTTACATAGGTTACGACTTTGGTAAACACTAACAGTAAGGGGCCCTCTAATAAGAAGAGAATTC
GTTCTAAGAAGGCCCATGTTTTGGCTGCATCTGTTGAACAAGCAACTGAGAATTTCTTGGACAAAGGGGATAAAATTGCA
AAGGAGAGTCAGCTTCTCAAGGAGGAGCTTGTGGCTGCTGTAGAAGATGTTTGAAAACAAGGTGATTTGATGAAGAGTGC
TGCGGGAGAGTTTGCAGATGATCCCTGCTCTTCTGTGAAGCGTGGTAACATGGTTCGGGCAGCTCGAGCTTTGCTTTCTG
CTGTTACCCGGCTGCTTATTTTGGCTGACATGGCAGATGTCTACAAATTACTTTGTGCAGCTGAAAGTTGTGGAAGACGG
TATCTTGAAACTGAGGAATGCCGGCACTGAACAAGACTTAGGAATACAGTATAAAGCCCTGAAACCTGAAGTGGATAAAC
TGAACATTATGGCAGCTAAAAGGCAACAGGAACTGAAAGATGTGGGCCATCGTGATCAGATGGCTGCAGCCAGAGGAATC
CTGCAGAAAAACGTTCCGATTCTCTATACTGCTTCCCAGGCATGCCTGCAGCACCCTGATGTTGCAGCCTATAAGGCCAA
CAGAGACCTGATATATAAGCAGCTGCAGCAGGCAGTCACAGGCATTTCCAATGCAGCCCAGGCCACCGCATCGGATGATG
CCTCCCAGCACCAGGGCGGAGGAGGAGGAGAGCTGGCATATGCGCTCAATAACTTTGATAAACAAATCATTGTGGACCCC
TTGAGCTTCAGCGAGGAGCGCTTCAGGCCTTCCCTGGAGGAGCGCCTGGAAAGCATCATTAGTGGGGCTGCCCTGATGGC
TGACTCGTCCTGCACTCATGATGACTGACGTGAGAGAATTGTGGCTGAGTGTACTGCTGTCTGCCAGGCCCTGCAGTACC
TGCTCTCAGAGTACATGGGCAATGCTGGATGTAAAGAAAGAAGTGATGCACTCAATTCTGCAATAGATAAAATGACCAAG
AAGACCAGGGACCTGCGTAGACAGCTTCGCAAAGCTGTCATGGACCATGTGTCAGATTCATTCCTGGAAACCAACGTTCC
ACTTTTAGTGTTGATTGAAGCTGCAAAGAATGGAAATGAGAAAGAAGTTAAAGAGTATGCCCAAGTTTTCCGTGAACATG
CCAACAAATTGACTGAGGTCGCCAACTTGGCCTGCTCTATTTCAAACAATGAAGAAGGTGTAAAGCTTGTTCGAATGTCT
GCGAGCCAGCTAGAAGCCCTCTGCCCTCAGGTTATTAATGCTGCATTGGCTTTAGCAGCAAAACCACAGAGTAAGCTGGC
CCAAGAGAACATGGATCTTTTTAAAGAGCAGTGGGAAAAACAGGTCCATGTTCTCACAGATGCTGTCGATGACATCACTT
CCATTGATGACTTCTTGGCTGTCTCAGAGAATCACTTATTGGAAGATGTGAACAAATGTGTCATTGCTCTCCAAGAGAAA
GATGTGGATGGGCTAGACCGCACAGCTGGTGCAATCCGAGGCCGGGCA

Alignment

ORF - retro_mluc_422 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.45 %
• Parental protein coverage: 60.6 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MTAVHTGNINFKWDPKSLEIRTLAVERLLEPLVTQVTTLVNTNSKGPSNKKRGRSKKAHVLAASVEQATE
          MTAVHTGNINFKWDPKSLEIRTLAVERLLEPLVT.VTTLVNTNSKGPSNKKR.RSKKAHVLAASVEQATE
Retrocopy MTAVHTGNINFKWDPKSLEIRTLAVERLLEPLVT*VTTLVNTNSKGPSNKKRIRSKKAHVLAASVEQATE

Parental  NFLDKGDKIAKESQFLKEELVAAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLI
          NFLDKGDKIAKESQ.LKEELVAAVEDV.KQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLI
Retrocopy NFLDKGDKIAKESQLLKEELVAAVEDV*KQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLI

Parental  LADMADVYKLL-VQLKVVEDGILKLRNAGTEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAA
          LADMADVYKLL.VQLKVVEDGILKLRNAGTEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAA
Retrocopy LADMADVYKLL>VQLKVVEDGILKLRNAGTEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAA

Parental  ARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVTGISNAAQATASDDASQHQGGGGGELA
          ARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVTGISNAAQATASDDASQHQGGGGGELA
Retrocopy ARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVTGISNAAQATASDDASQHQGGGGGELA

Parental  YALNNFDKQIIVDPLSFSEERFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLS
          YALNNFDKQIIVDPLSFSEERFRPSLEERLESIISGAALMADSSCT.DD.RERIVAEC.AV.QALQ.LLS
Retrocopy YALNNFDKQIIVDPLSFSEERFRPSLEERLESIISGAALMADSSCTHDD*RERIVAECTAVCQALQYLLS

Parental  EYMGNAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEY
          EYMGNAG.KERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEY
Retrocopy EYMGNAGCKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEY

Parental  AQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKE
          AQVFREHANKL.EVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKE
Retrocopy AQVFREHANKLTEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKE

Parental  QWEKQVRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRA
          QWEKQV.VLTDAVDDITSIDDFLAVSENH.LEDVNKCVIALQEKDVDGLDRTAGAIRGRA
Retrocopy QWEKQVHVLTDAVDDITSIDDFLAVSENHLLEDVNKCVIALQEKDVDGLDRTAGAIRGRA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_422 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000006820	1 retrocopy	retro_cjac_963,
Myotis lucifugus	ENSMLUG00000012995	1 retrocopy	retro_mluc_422 ,
Otolemur garnettii	ENSOGAG00000011865	1 retrocopy	retro_ogar_516,