RetrogeneDB ID: retro_mluc_406

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02059905:38701..39154(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: U2AF2
• Ensembl ID: ENSMLUG00000011051
• Aliases: None
• Description: None

Sequence

>retro_mluc_406
GGAGCTGTGCCCACTGTGGTCCCGGACTCTGCCCACAAGCTGTTCATCGGGGGCTTACCCAACTACCTGAACGATGACCA
GGTGAAAGAGCTGCTGACATGGTTCGGGCCTCTCAAGGCCTTCAACCTGGTCAAGGACAGCGCCACCGGGCTCTCCAAGG
GCTGCGCCTTCTGTGAGTATGTGGTCATCAACGTCACGGATCAGGCCATGGTGGGGCTGAACGGGATGCAGCTGGGGGAC
AAGAAACTGCTGGTCCAGAGGGCGGGTGTGGGAGCCAAGAATGCCACGCCGAGCACCATCCACCAGTCCCCCGTGACCCT
GCAAGTGCCGGGCCTGCTGAGCTCCCAGGTGCAGGTGGGCGGCCACCGCACGAAGGTCCTGTGCCTCCTGAACACGGTGC
TGCCCGAGGAGCTGCTGGACGATGGGGAGTACGAGGAGATCGTGGAGGACGTG

Alignment

ORF - retro_mluc_406 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.45 %
• Parental protein coverage: 64.32 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI
          G.V.TVVPDSAHKLFIGGLPNYLNDDQVKELLT.FGPLKAFNLVKDSATGLSKG.AFCEYV.INVTDQA.
Retrocopy GAVPTVVPDSAHKLFIGGLPNYLNDDQVKELLTWFGPLKAFNLVKDSATGLSKGCAFCEYVVINVTDQAM

Parental  AGLNGMQLGDKKLLVQRASVGAKNATLVSLPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPE
          .GLNGMQLGDKKLLVQRA.VGAKNAT....PSTI.Q.PVTLQVPGL.SSQVQ.GGH.T.VLCL.N.VLPE
Retrocopy VGLNGMQLGDKKLLVQRAGVGAKNAT----PSTIHQSPVTLQVPGLLSSQVQVGGHRTKVLCLLNTVLPE

Parental  ELLDDEEYEEIVEDV
          ELLDD.EYEEIVEDV
Retrocopy ELLDDGEYEEIVEDV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_406 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Loxodonta africana	ENSLAFG00000018056	1 retrocopy	retro_lafr_94,
Myotis lucifugus	ENSMLUG00000011051	2 retrocopies	retro_mluc_406 , retro_mluc_797,
Macaca mulatta	ENSMMUG00000004810	1 retrocopy	retro_mmul_30,
Mus musculus	ENSMUSG00000030435	3 retrocopies	retro_mmus_2251, retro_mmus_3663, retro_mmus_991,
Otolemur garnettii	ENSOGAG00000007206	1 retrocopy	retro_ogar_3304,