RetrogeneDB ID: retro_mluc_310

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429981:1289324..1290326(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000010298
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017095
• Aliases: None
• Description: None

Sequence

>retro_mluc_310
ATGAACCCTTTAACGAAAGTGAAGCTGATCAATGAGCTGAATGAGCGTGAGGCCCAGCTTGGGGTGGCGGATACAGTGTC
CTGGCATTCCGAGTACAAAGACAGCGCCTGGATCTTCCTGGGAGGACTTCCCTATGAACTGACTGAAGGAGATATCATCT
GTGTATTCTCACAATATGGGGAGATCGTTAACATTAATCTGGTGCGAGACAAGAAGACTGGGAAATCCAAAGGATTCTGT
TTCCTCTGCTATGAAGACCAGAGGAGCACAATTCTGGCTGTTGACAATTTTAATGGGATAAAAATTAAAGGAAGAACTAT
CCGAGTGGATCATGTGTCTAACTATCGGACTCCTAAGGACTCAGAAGAAATGGATATTGTGACCAAAGAGCTCCAGGAGA
AGGGCTGTGGGGCTCACACCCCTTCATCAAATTCATCTGAGGGCTCTGAAGAGGACAAACCCACCAAAAAACACAAAAAA
GACAAAAAGGAAAAAAAGAAAAGAAAAAAAGACAAAGAGAAGACTGATCAGGAGGAACTGGCAGAGCAGCCAGCCTCCTC
TTCAACTCCTAGAAGCAAGATGATAAGGGAAAAGGACGACCCTGGCTCTAAAAAGCACAGCAGCAAGAACTCAGAGAGGG
GTCAGAAGCCAGAGTCTAGGGAGGTGTGGAAGCACCACCCCAGCTCCCCTGGGGTCAAGACCACCTGCCGCAGGGGAGTA
GAGGACCATGAGCAGGAGCTGAAGAGGGAGAAGCCCAAGCACGAGCACAAGTCCTCAAGCAGGAGGGAAGAAAGAGAAGA
AAAAAACAGGGATAGGGACAGAGGTCGAAGCTCAGACATACATTCTGGCTGTCACGAGGGGCATTCTGAGGGACACAGCC
GTAGAAGTAGAAGTAGAAGTAGAAGTAGAAGTAGGAGCCGAGATAAATCCCATAGGCCTAAAAAGGCCCGGCACTCTCGA
GACCTGGACCCCTCAAATCCCAATGACCGCAGGCATCACTGA

Alignment

ORF - retro_mluc_310 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.21 %
• Parental protein coverage: 99.7 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQNRYGEIVNINLVR
          .PLTKVKLINELNERE.QLGVA..VSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQ..YGEIVNINLVR
Retrocopy NPLTKVKLINELNEREAQLGVADTVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQ--YGEIVNINLVR

Parental  DKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRTPKESEEMDIVTKELQEKGCGAH
          DKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRTPK.SEEMDIVTKELQEKGCGAH
Retrocopy DKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRTPKDSEEMDIVTKELQEKGCGAH

Parental  TPSSNSSEGSEEDKPTKKHKKDKKEKKKRKKDKEKTDQEELAEQPASSSTPRNTMIKEKDDPGSKKHSSK
          TPSSNSSEGSEEDKPTKKHKKDKKEKKKRKKDKEKTDQEELAEQPASSSTPR..MI.EKDDPGSKKHSSK
Retrocopy TPSSNSSEGSEEDKPTKKHKKDKKEKKKRKKDKEKTDQEELAEQPASSSTPRSKMIREKDDPGSKKHSSK

Parental  NSERGQKPESREVWKHHPSSPEVKTTCRGGVEDHEQELKREKPKHEHKSSSRREEREEKNRDRDRGRSSD
          NSERGQKPESREVWKHHPSSP.VKTTCR.GVEDHEQELKREKPKHEHKSSSRREEREEKNRDRDRGRSSD
Retrocopy NSERGQKPESREVWKHHPSSPGVKTTCRRGVEDHEQELKREKPKHEHKSSSRREEREEKNRDRDRGRSSD

Parental  IRSGWHEGHSEGHSR--RSRSRSRSRSRDKSHRPKKARHSRDLDPSNPNDRRHH
          I.SG.HEGHSEGHSR..RSRSRSRSRSRDKSHRPKKARHSRDLDPSNPNDRRHH
Retrocopy IHSGCHEGHSEGHSRRSRSRSRSRSRSRDKSHRPKKARHSRDLDPSNPNDRRHH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_310 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000002436	2 retrocopies	retro_cjac_3040, retro_cjac_4128,
Equus caballus	ENSECAG00000008257	1 retrocopy	retro_ecab_664,
Echinops telfairi	ENSETEG00000001763	1 retrocopy	retro_etel_1004,
Microcebus murinus	ENSMICG00000015139	1 retrocopy	retro_mmur_590,
Myotis lucifugus	ENSMLUG00000017095	1 retrocopy	retro_mluc_310 ,
Oryctolagus cuniculus	ENSOCUG00000011809	1 retrocopy	retro_ocun_106,
Pteropus vampyrus	ENSPVAG00000004425	1 retrocopy	retro_pvam_1404,
Sarcophilus harrisii	ENSSHAG00000016412	1 retrocopy	retro_shar_2,
Tursiops truncatus	ENSTTRG00000016210	1 retrocopy	retro_ttru_1561,