RetrogeneDB - Retrocopy retro_mluc

                        
>retro_mluc_2546
TTGGACTTATGTTGGCTTCTCAGCGAAAACAAGAGCCACGGCAGTTCCACTTACAGAGATTTCCAGCAAGCTCTCTATGA

GTTATCACACCATGTCATTCAAGGAAATCTGAAGCCCGAACAAGCAGCTGATGTTTTCAATGACATCAGCGAATTTCATG

AGGATGTGCCTTCCATTCTTGTTGATGTCTTTTGCATGTTAGATGTTGAGACAACCGTTTTAGAAGGGAAGAGCAAGAGA

GACTGTTTTACACAATTGGTATCAGCGTCTTCGTATTTCATTTCAGACACGATTCTAAAGGAACTCCTGAATCCAGAAAC

ATTGGAATCATTAGGACTTATCAAACAATCATGGCAATTCCATCAAACATCAGTGAAAATCAAGACAAAACTCTTTTATA

TGCAGCAAAAGTTCAACTTGTTAAGAGAAGAGAATGAAGGCTATGCTAAGCTGATTGTTGAATTGAGGCAAGATTTATCG

GGAAATATGACTTGTGATTTAATCTTACAAAATATCAAATCCTTAATAGGATGCTTTCATCTAGATCCCAATAGAGTTTT

GGGTGTCATTTTAGAAGTGTTTGAATGCAGACCAGAATGTGATAACTTCTTTATATGTTTATTAGAATCTTGTGTGAATA

TGTGTGAGCCGCAAACACTTTGTCATATACTTGGGTTCAAATTCAAGTGTTACCAGGAGCTGAATGGAAAGACTCCTTCA

TCTTTCTGAAGAGTTGCAGAAGTGCTCCTACAAGGTAATCTTATTGATTTAAATGATCTCTATGTGCATCTTCTTCCAAC

TGATAATTGCATGATGGATGAATATAAACGAGAAATGGTGGAAGCTAAGGCCATTCTTCGAAAACTTACGGTGGCTGTAT

TGTTCTGAAAAAATGGATAAGCAAGATAAGGCAAAGGAAGAGGAGGAGGAGACAGTAGAAAAGCCACCTGACAACCAAAA

ACTTGGTTCGTTAGAAGCCTTATTAAAGATTGGCGATTGGCAGCATGCGCAGAACATGATGGATGGGATGCCTCCATACT

ATGCTGCTTCCCACAAGATGATAGCTCTTGCTATTTGCAAGCTTATTCACATAACTATTGAGCCTCTCTACCAAAGAGTT

GGCATTCCTAAAGGTGCTGAAGGCTCACCTGTTCGTGCTTTGCAAAATAAGAAAGCGCTAAAACAAGCAGGGAGCTTTGA

GGATTTGAGGACAGATGCCTTCAATATGTTCTGTTACCTCGGTCCCCACCTTTCTTGGGATCCCATTTTATTTGCAAAAG

TGGTGCGCATAGGCCAATCCTTTATGAAGGAGCTTCAGTCTGATGGAAGGAAACAAGAGGTTCAAGAGAAAGTGGACGTT

ATTCTTAGCTGTTTACTTGGCATTACTGACCAGGCCCTACTTCCATCTCTTTCTCTAATGGACTGCAATGCTTGTATGAC

TGAGGAACTATGGGGAATGTTAAAAACATTTCCATATCAGCATAGATATCATCTGTATGGCCAGTGGAAGAATGAAACTT

ACAACAGGTCCCTACTTTTAGTAAAAGTTAAAGCTCTAACAATAGACCAAGCTAGAGATATCATGAACCATCTCACCAAG

GAAAATGTGAGGCCTTCTGGAAGACAAATTGGGAAATTGAGCCACAGCAATCCAACTATTCTGTTTGATTATATCTTGGC

AAAAATACAGATGTTGGCACCTGTAGTAGATTCACTGGAATGCCTCACCTCATTGAATTACGATGTCTTGGCCTATTGTA

TCATTGAGGCTTCAGCAAATCCAGAAAAGGGAAGGATGACACATGACGATACAACCAGTTCAAGCTGGCTTCGGCCTCTT

GTTAGTTTCTGTGCTGCAGTCTTTCCTAAATATCCAATGGATCTGGCTGGTCTTCTGCAATATGTGGCTCATCAGCTCAA

GGCAGGCAGAAGTATTGGCCTGCTCATATTGCAAGAAGTGGTACATAAAATGGCAGGAATAGAAATCACTGGGGAAGAGA

CGATGACAACGGAGCAACTAGAGGCCATGACTGGTGGAGAGCAACTGAGAGCTGAGGGAGGTTCTTGTGGCCAGACCAGA

AACACTAAAAAATCCTCCCAGAGATTAAAGGATGCCCTATTGGACTATGACCTTGCTCTTCCCCTTGTTTTGATGATAGC

TCAGCAGGGGGATAGGGTGATCTTACAGGAAGGTAGAGAGAAAGATGTGGAACTAGAGGGAAAGCTCTATGACCAGTGTC

ATGATACCTTGGTACAGTTTGGTGGATTTTTAGCATTGAATCTAAGCACAGAAGAGCACACAAAGAGAGTGCTTTCGATT

GATGTGCTCTATCACGAATTTCATATACCCCATGATGCAGCATTTTTCTTGTCTAGGCCAACGTATGCACGCCATATCTC

ATCCAAATGTGATGAACTTAAAAGATCAGACAAGGGAAGTAAACAGCAACATAAAGTCCACAAGTACATAGCATCATGTG

AAATGGTGATGGTGCCTGTCCGTGAAGCGGTAGTCTCATTGCCCGTTTCCAATGTCTGGGATGACATCAGCCCTCGATTC

TATGCCACATTCTGGTCACTGACAACGTATGACCTTGCAGTTCCACACACCAGCTATGAACGGGAAGTCAGTAAACTTAA

AGTCCAGATGAAAGCACTTGATGACAATTAAGAAATGGCTCCAAAGAAAAAGAAAAAAGAAAAGGAGCGCTGT

ORF - retro_mluc_2546 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	78.12 %
Parental protein coverage:	57.91 %
Number of stop codons detected:	2
Number of frameshifts detected:	1

Retrocopy - Parental Gene Alignment:

                                ParentalLHLCRILSENKSHDSSTYRDFQQVLYELSYHVIKGNLKHEQASNVFNDISEFREDLPSILADVFCILDIE
L.LC..LSENKSH.SSTYRDFQQ.LYELS.HVI.GNLK.EQA..VFNDISEF.ED.PSIL.DVFC.LD.E
RetrocopyLDLCWLLSENKSHGSSTYRDFQQALYELSHHVIQGNLKPEQAADVFNDISEFHEDVPSILVDVFCMLDVE
ParentalTNCLEEKSKRDYFTQLVLACLYLVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNL
T..LE.KSKRD.FTQLV.A..Y..SDT.LKE.L.PETLESLGLIKQS.QF.Q.SVKIKTKLFY.QQKFNL
RetrocopyTTVLEGKSKRDCFTQLVSASSYFISDTILKELLNPETLESLGLIKQSWQFHQTSVKIKTKLFYMQQKFNL
ParentalLREENEGYAKLIAELGQDLSGNITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLES
LREENEGYAKLI.EL.QDLSGN.T.DLIL.NIKSLIGCF.LDPNRVL.VILEVFECRPE.D.FFI.LLES
RetrocopyLREENEGYAKLIVELRQDLSGNMTCDLILQNIKSLIGCFHLDPNRVLGVILEVFECRPECDNFFICLLES
ParentalYMSMCEPQTLCHILGFKFKFYQEPSGETPSSLYRVAAVLLQVNLIDLDDLYVHLLPADNCIMDEHKREIV
...MCEPQTLCHILGFKFK.YQE..G.TPSS..RVA.VLLQ.NLIDL.DLYVHLLP.DNC.MDE.KRE.V
RetrocopyCVNMCEPQTLCHILGFKFKCYQELNGKTPSSF*RVAEVLLQGNLIDLNDLYVHLLPTDNCMMDEYKREMV
ParentalEAKQIVRKLTMVVL-SSEKMDEREKEKEKEDDKVEKPPDNQKLGLLEALLKIGDWQHAQNIMDQMPPYYA
EAK.I.RKLT..VL.S...........E.E...VEKPPDNQKLG.LEALLKIGDWQHAQN.MD.MPPYYA
RetrocopyEAKAILRKLTVAVL>SEKMDKQDKAKEEEE-ETVEKPPDNQKLGSLEALLKIGDWQHAQNMMDGMPPYYA
ParentalASHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKRAPKQAESFEDLRRDVFNMFCYLGPHLS
ASHK.IALAICKLIHITIEPLY.RVG.PKGA.GSPV.ALQNK.A.KQA.SFEDLR.D.FNMFCYLGPHLS
RetrocopyASHKMIALAICKLIHITIEPLYQRVGIPKGAEGSPVRALQNKKALKQAGSFEDLRTDAFNMFCYLGPHLS
ParentalHDPILFAKVVRIGKSFMKEFQSDGSKQEDKEKTEVILSCLLSITDQVLLPSLSLMDCNACMSEELWGMFK
.DPILFAKVVRIG.SFMKE.QSDG.KQE..EK..VILSCLL.ITDQ.LLPSLSLMDCNACM.EELWGM.K
RetrocopyWDPILFAKVVRIGQSFMKELQSDGRKQEVQEKVDVILSCLLGITDQALLPSLSLMDCNACMTEELWGMLK
ParentalTFPYQHRYRLYGQWKNETYNSHPLLVKVKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYI
TFPYQHRY.LYGQWKNETYN...LLVKVKA.TID.A..IM..LTKENV.PSGRQIGKLSHSNPTILFDYI
RetrocopyTFPYQHRYHLYGQWKNETYNRSLLLVKVKALTIDQARDIMNHLTKENVRPSGRQIGKLSHSNPTILFDYI
ParentalLSQIQKYDNLITPVVDSLKYLTSLNYDVLACILLNCIIEALANPEKERMKHDDTTISSWLQSLASFCGAV
L..IQ.......PVVDSL..LTSLNYDVLA........EA.ANPEK.RM.HDDTT.SSWL..L.SFC.AV
RetrocopyLAKIQ----MLAPVVDSLECLTSLNYDVLAYCII----EASANPEKGRMTHDDTTSSSWLRPLVSFCAAV
ParentalFRKYPIDLAGLLQYVANQLKAGKSFDLLILKEVVQKMAGIEIT--EEMTMEQLEAMTGGEQLKAEGGYFG
F.KYP.DLAGLLQYVA.QLKAG.S..LLIL.EVV.KMAGIEIT..E.MT.EQLEAMTGGEQL.AEGG..G
RetrocopyFPKYPMDLAGLLQYVAHQLKAGRSIGLLILQEVVHKMAGIEITGEETMTTEQLEAMTGGEQLRAEGGSCG
ParentalQIRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQFGGFLASN
Q.RNTKKSSQRLKDALLD.DLALPL.L..AQQ...VI.QEG.EK...L.GKLYDQCHDTLVQFGGFLA.N
RetrocopyQTRNTKKSSQRLKDALLDYDLALPLVLMIAQQGDRVILQEGREKDVELEGKLYDQCHDTLVQFGGFLALN
ParentalLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGSKQQHKVHKYITSCEMVM
LSTE...KRV.SIDVL..EFH.PHDAAFFLSRP.YA.HISSK.DELK.S.KGSKQQHKVHKYI.SCEMVM
RetrocopyLSTEEHTKRVLSIDVLYHEFHIPHDAAFFLSRPTYARHISSKCDELKRSDKGSKQQHKVHKYIASCEMVM
ParentalAPVHEAVVSLHVSKVWDDISPQFYATFWSLTMYDLAVPHTSYEREVSKLKVQMKAIDDNQEMPPNKKKKE
.PV.EAVVSL.VS.VWDDISP.FYATFWSLT.YDLAVPHTSYEREVSKLKVQMKA.DDN.EM........
RetrocopyVPVREAVVSLPVSNVWDDISPRFYATFWSLTTYDLAVPHTSYEREVSKLKVQMKALDDN*EMAXXXXXXX
ParentalKERC
.ERC
RetrocopyXERC

                            

                            Legend:
                            
                                *Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

                        

RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_2546 was not experimentally validated.

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 3 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000013656	4 retrocopies	retro_mluc_2531, retro_mluc_2546 , retro_mluc_2599, retro_mluc_2606,
Mus musculus	ENSMUSG00000037475	1 retrocopy	retro_mmus_172,
Rattus norvegicus	ENSRNOG00000007315	1 retrocopy	retro_rnor_89,

	RetrogeneDB ID:	retro_mluc_2546
Retrocopy location	Organism:	*Microbat (Myotis lucifugus)*
	Coordinates:	GL430878:86510..89223(+)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	None
	Aliases:	None
	Status:	NOVEL
Parental gene information	Parental gene summary:
	Parental gene symbol:	THOC2
	Ensembl ID:	ENSMLUG00000013656
	Aliases:	None
	Description:	None

Parental	LHLCRILSENKSHDSSTYRDFQQVLYELSYHVIKGNLKHEQASNVFNDISEFREDLPSILADVFCILDIE
	L.LC..LSENKSH.SSTYRDFQQ.LYELS.HVI.GNLK.EQA..VFNDISEF.ED.PSIL.DVFC.LD.E
Retrocopy	LDLCWLLSENKSHGSSTYRDFQQALYELSHHVIQGNLKPEQAADVFNDISEFHEDVPSILVDVFCMLDVE

Parental	TNCLEEKSKRDYFTQLVLACLYLVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNL
	T..LE.KSKRD.FTQLV.A..Y..SDT.LKE.L.PETLESLGLIKQS.QF.Q.SVKIKTKLFY.QQKFNL
Retrocopy	TTVLEGKSKRDCFTQLVSASSYFISDTILKELLNPETLESLGLIKQSWQFHQTSVKIKTKLFYMQQKFNL

Parental	LREENEGYAKLIAELGQDLSGNITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLES
	LREENEGYAKLI.EL.QDLSGN.T.DLIL.NIKSLIGCF.LDPNRVL.VILEVFECRPE.D.FFI.LLES
Retrocopy	LREENEGYAKLIVELRQDLSGNMTCDLILQNIKSLIGCFHLDPNRVLGVILEVFECRPECDNFFICLLES

Parental	YMSMCEPQTLCHILGFKFKFYQEPSGETPSSLYRVAAVLLQVNLIDLDDLYVHLLPADNCIMDEHKREIV
	...MCEPQTLCHILGFKFK.YQE..G.TPSS..RVA.VLLQ.NLIDL.DLYVHLLP.DNC.MDE.KRE.V
Retrocopy	CVNMCEPQTLCHILGFKFKCYQELNGKTPSSF*RVAEVLLQGNLIDLNDLYVHLLPTDNCMMDEYKREMV

Parental	EAKQIVRKLTMVVL-SSEKMDEREKEKEKEDDKVEKPPDNQKLGLLEALLKIGDWQHAQNIMDQMPPYYA
	EAK.I.RKLT..VL.S...........E.E...VEKPPDNQKLG.LEALLKIGDWQHAQN.MD.MPPYYA
Retrocopy	EAKAILRKLTVAVL>SEKMDKQDKAKEEEE-ETVEKPPDNQKLGSLEALLKIGDWQHAQNMMDGMPPYYA

Parental	ASHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKRAPKQAESFEDLRRDVFNMFCYLGPHLS
	ASHK.IALAICKLIHITIEPLY.RVG.PKGA.GSPV.ALQNK.A.KQA.SFEDLR.D.FNMFCYLGPHLS
Retrocopy	ASHKMIALAICKLIHITIEPLYQRVGIPKGAEGSPVRALQNKKALKQAGSFEDLRTDAFNMFCYLGPHLS

Parental	HDPILFAKVVRIGKSFMKEFQSDGSKQEDKEKTEVILSCLLSITDQVLLPSLSLMDCNACMSEELWGMFK
	.DPILFAKVVRIG.SFMKE.QSDG.KQE..EK..VILSCLL.ITDQ.LLPSLSLMDCNACM.EELWGM.K
Retrocopy	WDPILFAKVVRIGQSFMKELQSDGRKQEVQEKVDVILSCLLGITDQALLPSLSLMDCNACMTEELWGMLK

Parental	TFPYQHRYRLYGQWKNETYNSHPLLVKVKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYI
	TFPYQHRY.LYGQWKNETYN...LLVKVKA.TID.A..IM..LTKENV.PSGRQIGKLSHSNPTILFDYI
Retrocopy	TFPYQHRYHLYGQWKNETYNRSLLLVKVKALTIDQARDIMNHLTKENVRPSGRQIGKLSHSNPTILFDYI

Parental	LSQIQKYDNLITPVVDSLKYLTSLNYDVLACILLNCIIEALANPEKERMKHDDTTISSWLQSLASFCGAV
	L..IQ.......PVVDSL..LTSLNYDVLA........EA.ANPEK.RM.HDDTT.SSWL..L.SFC.AV
Retrocopy	LAKIQ----MLAPVVDSLECLTSLNYDVLAYCII----EASANPEKGRMTHDDTTSSSWLRPLVSFCAAV

Parental	FRKYPIDLAGLLQYVANQLKAGKSFDLLILKEVVQKMAGIEIT--EEMTMEQLEAMTGGEQLKAEGGYFG
	F.KYP.DLAGLLQYVA.QLKAG.S..LLIL.EVV.KMAGIEIT..E.MT.EQLEAMTGGEQL.AEGG..G
Retrocopy	FPKYPMDLAGLLQYVAHQLKAGRSIGLLILQEVVHKMAGIEITGEETMTTEQLEAMTGGEQLRAEGGSCG

Parental	QIRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQFGGFLASN
	Q.RNTKKSSQRLKDALLD.DLALPL.L..AQQ...VI.QEG.EK...L.GKLYDQCHDTLVQFGGFLA.N
Retrocopy	QTRNTKKSSQRLKDALLDYDLALPLVLMIAQQGDRVILQEGREKDVELEGKLYDQCHDTLVQFGGFLALN

Parental	LSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGSKQQHKVHKYITSCEMVM
	LSTE...KRV.SIDVL..EFH.PHDAAFFLSRP.YA.HISSK.DELK.S.KGSKQQHKVHKYI.SCEMVM
Retrocopy	LSTEEHTKRVLSIDVLYHEFHIPHDAAFFLSRPTYARHISSKCDELKRSDKGSKQQHKVHKYIASCEMVM

Parental	APVHEAVVSLHVSKVWDDISPQFYATFWSLTMYDLAVPHTSYEREVSKLKVQMKAIDDNQEMPPNKKKKE
	.PV.EAVVSL.VS.VWDDISP.FYATFWSLT.YDLAVPHTSYEREVSKLKVQMKA.DDN.EM........
Retrocopy	VPVREAVVSLPVSNVWDDISPRFYATFWSLTTYDLAVPHTSYEREVSKLKVQMKALDDN*EMAXXXXXXX

Parental	KERC
	.ERC
Retrocopy	XERC

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_mluc_2546