RetrogeneDB ID: retro_mluc_243

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430357:479992..480928(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022494
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000364
• Aliases: None
• Description: None

Sequence

>retro_mluc_243
ATGGCGGGCCCGCTGAGCGTCGGCGTGAACCTGGAGGCCTTCTCCCAGGCCATCGGCGCCATCCAGGCGCTGCGCTCCAG
CGTGAGCAGGGTGTTCGACTGCCTGGGGGACGGCCTGCGCAACAGGGAGACGCTGGAGGGCCGGGAGAAGGCCTTCATCG
CGCGCTTCCGGGACAACCTGCACTCGGTCCACCGGGACCTCCACGAGCTGGAACGTCTGAGCAACCTGGTCTGCAAGCCG
TTGGAGAACCACCCGCTCCATAACAGCGGCCTGCTGAGCCTGGACCCCGCGCAGGACAAAACCCCCCTCTACAGCCAGCT
CCTGCAAGCCTACAAGTGGTCCAGCAAGCTGCAGTGCCACGCAGGCCTGGCAGCCGGCCTCCTGAATCAACAGTCGCTGA
AACGCTCTGCTAACCAGATGGGAGCGCCTGCGAAACGCCGGCCCAAGGCGCAGCCCACCATGCTCCTCCTGCCGCCTCAG
TATGTTGATGACGTGATCAGCCGCATTGACAGGATGTTTCCTGAAATGTCCATCCAGTTATCCAGGCCCAATGGAACGTC
GGCGATGCTTCTGGTGACCTTGGGAAAGGTGCTGAAAGCGATTGTCGTCCTGCGGAGCCTGTTCATTGACCGAACGATCG
TGAAGGGCTACAACGAGAACGTCTACACGGAAGGCGGCAAGCTGGATATATGGTCCAAGTCCAACTACCAAGTGTTCCGG
AAGGTGACAGACCACGCCACCACTGCCCTGCTGCACTACCAGCTGCCCCAGATGCCGCATGTCGTGGTCCGGTCCTTCAT
GACCTGGCTGAGAAGTTACATAAAGCTGTTCCAGGCGCCCTGCCAGCGCTGCGGGAAGTTCCTGTGGGACGGCCTGCCCC
CCACCTGGAGGGACTTCCGCACCCTCGAAGCCTTCCACGACACCTGCCGGCAGTGA

Alignment

ORF - retro_mluc_243 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.12 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MADPLSVGVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNLHSVNRDLNEL
          MA.PLSVGVNLEAFSQAI.AIQALRSSVSRVFDCL.DG.RN.ETLEGREKAFIA.F.DNLHSV.RDL.EL
Retrocopy MAGPLSVGVNLEAFSQAIGAIQALRSSVSRVFDCLGDGLRNRETLEGREKAFIARFRDNLHSVHRDLHEL

Parental  ERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYHAGLASGLLNQQSLKRSANQM
          ERLSNLV.KP.ENHPLHNSGLLSLDP.QDKTPLYSQLLQAYKWS.KLQ.HAGLA.GLLNQQSLKRSANQM
Retrocopy ERLSNLVCKPLENHPLHNSGLLSLDPAQDKTPLYSQLLQAYKWSSKLQCHAGLAAGLLNQQSLKRSANQM

Parental  GVSAKRRPKAQPTTLVLPPQYVDDVISRIDRMFPEMSIQLSRPNGTSAMLLVTLGKVLKVIVVMRSLFID
          G..AKRRPKAQPT.L.LPPQYVDDVISRIDRMFPEMSIQLSRPNGTSAMLLVTLGKVLK.IVV.RSLFID
Retrocopy GAPAKRRPKAQPTMLLLPPQYVDDVISRIDRMFPEMSIQLSRPNGTSAMLLVTLGKVLKAIVVLRSLFID

Parental  RTIVKGYNENVYTEDGKLDIWSKSNYQVFQKVS
          RTIVKGYNENVYTE.GKLDIWSKSNYQVF.KV.
Retrocopy RTIVKGYNENVYTEGGKLDIWSKSNYQVFRKVT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_243 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000160563	1 retrocopy	retro_hsap_3342,
Gorilla gorilla	ENSGGOG00000010390	1 retrocopy	retro_ggor_130,
Loxodonta africana	ENSLAFG00000011556	1 retrocopy	retro_lafr_931,
Myotis lucifugus	ENSMLUG00000000364	1 retrocopy	retro_mluc_243 ,
Nomascus leucogenys	ENSNLEG00000012828	1 retrocopy	retro_nleu_115,
Pongo abelii	ENSPPYG00000019706	1 retrocopy	retro_pabe_109,
Pan troglodytes	ENSPTRG00000021492	1 retrocopy	retro_ptro_87,