RetrogeneDB ID: retro_mluc_2262

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430157:565264..566190(-)
• Located in intron of: ENSMLUG00000004392

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SUPT3H
• Ensembl ID: ENSMLUG00000016339
• Aliases: None
• Description: None

Sequence

>retro_mluc_2262
TTACACCAAGCTGCTGAAGTTTCTCAGCTCCGGGGAGCAAGGGTAGTATCTCCTGAAGATCTTCTGTTTTTCATGCGCAA
AGATAAGAAAAAACTTAGAAGACTGTTAAAATACATGTTTTTCCGAGACTACAAATCAAAGATTGTCAAAGGCATAGACG
AGGATGATCTTCTTGAAGACAAAATGAGTGGCAGTAATAATGCACACAAAAGACAGAAAACCGCACAGGACTTTCTCAAC
TCTATTGACCAAACGGGAGAACTCTTGGCGATGTTTGAAGATGATGAAATTGATGAAGTTAAACAAGAAAGAATGGAGAG
AGCAGAAAGACAAACTCGAATTATGGATTCAGCCTAATATGCAGAATTCTGTGAAAGTCGACAATTGAGTTTCTCCAAAA
AAGCCTCCAAATTTCGAGACTGGTTGGACTGTAGCAGTATGGAGATAAAACCCAATGTTATCGCTATGGAAATTTTGGCA
TATTTAGCGTATGAAACTGTGGCACAGTTAGTGGATCTGGCTCTACTTGTGAGGCAGGACATGGGAACCAAGGCAGGAGA
CCCGTTCGGCCACGCCATTTCGGCCGCCTTCATTCAGTATCACAGCTCTGCCGAGGGATCTTGCATGAAGTCCTACCCAG
ACTCCCCTGAAAATACACCTCCTCCTACACCAACAGCTCCATCCTCTGGACCACAGCATGCAGGGAAAGCCACAGCAGGA
TCCCTCGGGAATGGGAATGCTGGACAAGACTCAGCAAAAACCAAGCGAAGGAAAAGAAAAAAGAGCACTGCACCTGTGGT
GTTGAGGCTCACAGCGATGCCATCCAGCCCTGCCACATCAGAGAGGCCATTTGGCGCTACGGCCACAAGATTGGCCCCCT
TTCCCCATTCATAGTACGTAATAACAGAGTTATAAAAAGTTATATT

Alignment

ORF - retro_mluc_2262 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.55 %
• Parental protein coverage: 99.36 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  IHQAAEVSQLRGARVISPEDLLFLMRKDKKKLRRLLKYMFFRDYKSKIVKGIDEDDLLEDKLSGSNNANK
          .HQAAEVSQLRGARV.SPEDLLF.MRKDKKKLRRLLKYMFFRDYKSKIVKGIDEDDLLEDK.SGSNNA.K
Retrocopy LHQAAEVSQLRGARVVSPEDLLFFMRKDKKKLRRLLKYMFFRDYKSKIVKGIDEDDLLEDKMSGSNNAHK

Parental  RQKTAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTRIMDSAQYAEFCESRQLSFSKKASKFRD
          RQKTAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTRIMDSA.YAEFCESRQLSFSKKASKFRD
Retrocopy RQKTAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTRIMDSA*YAEFCESRQLSFSKKASKFRD

Parental  WLDCSSMEIKPNVIAMEILAYLAYETVAQLVDLALLVRQDMGTKAGDPFGHAISAAFIQYHSSAEGSCMK
          WLDCSSMEIKPNVIAMEILAYLAYETVAQLVDLALLVRQDMGTKAGDPFGHAISAAFIQYHSSAEGSCMK
Retrocopy WLDCSSMEIKPNVIAMEILAYLAYETVAQLVDLALLVRQDMGTKAGDPFGHAISAAFIQYHSSAEGSCMK

Parental  SYPDSPENTPPPTPTAPSSGPQHAGKATAGSLGNGSAGQDSAKTKQRKRKKSTA-ACGVEAHSDAIQPCH
          SYPDSPENTPPPTPTAPSSGPQHAGKATAGSLGNG.AGQDSAKTK.RKRKKSTA..CGVEAHSDAIQPCH
Retrocopy SYPDSPENTPPPTPTAPSSGPQHAGKATAGSLGNGNAGQDSAKTKRRKRKKSTA<TCGVEAHSDAIQPCH

Parental  IREAIRRYGHKIGPLSPFTSLVKNSLKSWI
          IREAI.RYGHKIGPLSPF........KS.I
Retrocopy IREAIWRYGHKIGPLSPFIVRNNRVIKSYI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2262 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000024037	1 retrocopy	retro_cpor_1320,
Dasypus novemcinctus	ENSDNOG00000011043	1 retrocopy	retro_dnov_150,
Echinops telfairi	ENSETEG00000004704	1 retrocopy	retro_etel_1029,
Myotis lucifugus	ENSMLUG00000016339	1 retrocopy	retro_mluc_2262 ,
Oryctolagus cuniculus	ENSOCUG00000014574	1 retrocopy	retro_ocun_1724,