RetrogeneDB ID: retro_mluc_1583

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429866:2759999..2760724(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRO
• Ensembl ID: ENSMLUG00000014572
• Aliases: None
• Description: None

Sequence

>retro_mluc_1583
AGAAGAATCCTGGACTAGCACCTTTCCATCTCCACCTCCCAGTTCAAGAAGAAAAGGACATCAACGATGTCTTTCTTTTC
CAGGATCTCTTGGAAACTGAGGTTCTAGAAGAGGGAGCCTCTGAAGAATGTGTTTTTCCTCTTGACAGAAAGAGCCCCCG
GATCCAGTGCTAAAAAGTGTCACATGTCAATGAAAGGCCTAGGAACCATGGCCTGTGAGAACCCCAACAAGATGAGAAAG
TACAAGAAAATTGTCCTAGACCTGCTGGTGCATGGATTGTATGATCCCGTGAGTTCTGAAGTCACCTGCATGAGCAGGAA
GACTCTGACCATCATCCTGGGCAAGATCCAGGGGGAAGGTTTGGGCTCTTCATAGACATCACTCTTCAGACCAGGACTCT
ACTAGATGCCAACAGGGACAGCCTGAGACACTCAGCCTTTGTCTCACTTGGGCAATTGGCTGCTTTTGCTGGGTGGAAAT
GGAAGAAAATTTTCACCAATCATATTAAGCAAACTCAAGATTCCCTCCTAATCCATTTACAGGATAGAAATCTCCAGGTT
GCCAAGGCTTGCAAAACCACATTTCGGGCCTGTTCTCCCTGTCTGAGACAAAGGTGGGAACACAGCTTCCAGAGTGAAGA
AGAGCAAAAGAACCTCAAGCTCTGCCCGCAGCTGAGCCACTATCACCCAGTGCTTCTGCAGTACTTCTACACAAATAAAA
TCCTG

Alignment

ORF - retro_mluc_1583 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.54 %
• Parental protein coverage: 97.98 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  RRILGQPLSMPTAQPKKKRTPMMSFFSKVSWKLRFQKREHLKNVLYILAERARDPSAKKRHMAVRGLGTM
          RRIL...LS..T.Q.KKKRT..MSFFS..SWKLRF.KRE.LKNV...L.ERA...SAKK.HM...GLGTM
Retrocopy RRILD*HLSISTSQFKKKRTSTMSFFSRISWKLRF*KREPLKNVFFLLTERAPGSSAKKCHMSMKGLGTM

Parental  ACENPDKVRKYKKVVLDMLVHGLYDPMSSEVIHESLKTLTIIL-GKIQGKGLGSFFIDITLQTRTLLDDE
          ACENP.K.RKYKK.VLD.LVHGLYDP.SSEV...S.KTLTIIL.G...G...G..FIDITLQTRTLLD..
Retrocopy ACENPNKMRKYKKIVLDLLVHGLYDPVSSEVTCMSRKTLTIIL<GQDPGGRFG-LFIDITLQTRTLLDAN

Parental  NDSLRYSAFVLFGQLPAFAGRKWKKFFIDQVKQTQDSLLIHLQDRNPQVAKACKTTFRACSPYLRQRKER
          .DSLR.SAFV..GQL.AFAG.KWKK.F....KQTQDSLLIHLQDRN.QVAKACKTTFRACSP.LRQR.E.
Retrocopy RDSLRHSAFVSLGQLAAFAGWKWKKIFTNHIKQTQDSLLIHLQDRNLQVAKACKTTFRACSPCLRQRWEH

Parental  SFQSEDDQRNPKLCRQLSLYHPELLQYFYANKIL
          SFQSE..Q.N.KLC.QLS.YHP.LLQYFY.NKIL
Retrocopy SFQSEEEQKNLKLCPQLSHYHPVLLQYFYTNKIL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1583 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000047635	1 retrocopy	retro_btau_1042,
Myotis lucifugus	ENSMLUG00000014572	1 retrocopy	retro_mluc_1583 ,