RetrogeneDB ID: retro_mluc_1536

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429857:4080081..4080560(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CNN2
• Ensembl ID: ENSMLUG00000013160
• Aliases: None
• Description: None

Sequence

>retro_mluc_1536
CTGCAGAGTGGCGTGGACATCGGCATCAAGTACTCGGGGAAGCAGCGGTGGAACTTCGATGACGCCACCATGAAGGCGGG
CCAGTGCGTCACTGGGCTCCAGATGGGCACCAACAGTGTGCCAGCCAGTCAGGAAGACAGCATATGGCACGAGAAGACAT
CTGCGTGACCCAAGAACCATAGCCTGCCACCCATGGGCCATTCATCCTCAGCCTGCCAATGGGCACCAACAAGTGTGCCA
GCAGGTGGGCACAATGGCTCCCAGGACCCAGCGGCACATCTGTGATGCCAAGCTGGGGACCAACAACTGTGACAACTCCT
CCTGTCTCTGCAGATGGGCTACATGCAGGGTGCCAACCAGAAGAGCCAGGTCTCTGGCCTGGGCTGGCAGGTATATGACC
CCAAGTGCTTCCCACAAGGCCCAGTGCTGACGGAGCCGGCAACTGCCCAAGCCCAGGGAAGGCCCTGGAATACCCCCCT

Alignment

ORF - retro_mluc_1536 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.72 %
• Parental protein coverage: 53.72 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  LQSGVDIGIKYSEKQERNFDDATMKAGQCVIGLQMGTN-KCASQSG-MTAYGTRRHLYD-PKNHILPPMD
          LQSGVDIGIKYS.KQ..NFDDATMKAGQCV.GLQMGTN..CASQSG..TAYGTRRHL.D.PKNH.LPPM.
Retrocopy LQSGVDIGIKYSGKQRWNFDDATMKAGQCVTGLQMGTN<QCASQSG<KTAYGTRRHLRD<PKNHSLPPMG

Parental  HST-ISLQMGTNKCAS-QVGMTAPGTRRHIYDTKLGTDKCDNSS-MSLQMGYTQGANQSGQVFGLGRQIY
          HS...SL.MGTNKCAS.QVG..AP.T.RHI.D.KLGT..CDNSS..SLQMGY.QGANQ..QV.GLG.Q.Y
Retrocopy HSS<LSLPMGTNKCAS<QVGTMAPRTQRHICDAKLGTNNCDNSS<LSLQMGYMQGANQKSQVSGLGWQVY

Parental  DPKYCPQGPV-ADGAPGSVGDCPSPGKAPEYPP
          DPK..PQGPV.ADGA....G.CPSPGKA.EYPP
Retrocopy DPKCFPQGPV<ADGA----GNCPSPGKALEYPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1536 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000028153	9 retrocopies	retro_ggor_1199, retro_ggor_1271, retro_ggor_1555, retro_ggor_1612, retro_ggor_1646, retro_ggor_1922, retro_ggor_2370, retro_ggor_305, retro_ggor_762,
Myotis lucifugus	ENSMLUG00000013160	4 retrocopies	retro_mluc_1536 , retro_mluc_1965, retro_mluc_2047, retro_mluc_2210,
Myotis lucifugus	ENSMLUG00000026228	1 retrocopy	retro_mluc_274,
Macaca mulatta	ENSMMUG00000015306	1 retrocopy	retro_mmul_1131,
Pongo abelii	ENSPPYG00000009302	12 retrocopies	retro_pabe_1299, retro_pabe_1397, retro_pabe_1838, retro_pabe_1920, retro_pabe_2171, retro_pabe_2249, retro_pabe_2900, retro_pabe_3512, retro_pabe_3515, retro_pabe_3543, retro_pabe_3823, retro_pabe_407,