RetrogeneDB ID: retro_mluc_1131

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429797:975240..976095(-)
• Located in intron of: ENSMLUG00000027696

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000015591
• Aliases: None
• Description: None

Sequence

>retro_mluc_1131
GGATCGGGCGGGTTCCGGAAGAGGAAGCACGACAGCTTCCCCCACGGCCCGCGGAGGGAAGGGAAGGACGTGAACGCGTC
GTCCCCCGTGATGGTGGCCTTCAAATCCTTTCAGCAGGAACTCGATGCACGACATGACAAATATGAGAGACTTGTAAAAC
TCAGTCGGGATATAACTGTAGAAAGTAAAAGGATAATCTTTCTGCTCCATAGGATTACAAGCACTCCTGATATGGAGGAA
ATATTGACTGAGTCGGAAATTAAATTGGATGGTGTCAGACAAAAGATACTGCAGGTGGCCCAGGAGCTCCTGGGAGAAGA
GATGCATCAATTCCATAGAGCCATTACGACAGGGCTCCAGGAATATGTGGAGGCCGTCTCTTTCCAACACTTCATCAGAA
CACGATCACTGATCAGTATGGAGGAAATCAATAAGCAGTTGGTATTTACAACGGAAGACAGTGGGAAAGAAAACAAGACG
CCCTCCTCCAACGCTCACGATAAAGAGTCTGGTACTTGGAGACTGAGAATCACCCCTGTCGATTACCTGCTGGGAGTGGC
CGATCTGACTGGCGAGTTGATGCGGATGTGCATTAATAGCGTGGGCAACGGAGACATCGACACCCCCTTTGAAGTGAGCC
AGTTCTTACGCCAGGTGTATGATGGGTTTTCATTCATTGGCAATACCGGCCCTTACGAGGTGTCTAAGAAGCTCTATACC
TTGAAGCAGAGCCTGGCCAAGGTGGAGAATGCCTGTTATGCCTTGAAAGTCAGAGGCTCAGAAATTCCCAAACACATGCT
GGCAGATGTCTTTTCAGTTAAAACAGAAATGATTGATCAAGAAGAGGGCATTTCT

Alignment

ORF - retro_mluc_1131 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.91 %
• Parental protein coverage: 98.29 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GAGGFRKRKHDSFPHGPRREGKDVNASSPVMVALQIVSFQQELDARHDKYERLVKLSRDITVESKRIIFL
          G.GGFRKRKHDSFPHGPRREGKDVNASSPVMVA....SFQQELDARHDKYERLVKLSRDITVESKRIIFL
Retrocopy GSGGFRKRKHDSFPHGPRREGKDVNASSPVMVAFK--SFQQELDARHDKYERLVKLSRDITVESKRIIFL

Parental  LHRITSTPDMEEILTESEIKLDGVRQKILQVAQELLGEEMHQFHRAITTGLQEYVEAVSFQHFIRTRSLI
          LHRITSTPDMEEILTESEIKLDGVRQKILQVAQELLGEEMHQFHRAITTGLQEYVEAVSFQHFIRTRSLI
Retrocopy LHRITSTPDMEEILTESEIKLDGVRQKILQVAQELLGEEMHQFHRAITTGLQEYVEAVSFQHFIRTRSLI

Parental  SMEEINKQLVFTTEDSGKENKTPSSDAHDKESGTWRLRITPVDYLLGVADLTGELMRMCINSVGNGDIDT
          SMEEINKQLVFTTEDSGKENKTPSS.AHDKESGTWRLRITPVDYLLGVADLTGELMRMCINSVGNGDIDT
Retrocopy SMEEINKQLVFTTEDSGKENKTPSSNAHDKESGTWRLRITPVDYLLGVADLTGELMRMCINSVGNGDIDT

Parental  PFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMI
          PFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMI
Retrocopy PFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMI

Parental  DQEEGIS
          DQEEGIS
Retrocopy DQEEGIS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1131 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000002637	1 retrocopy	retro_amel_1655,
Dasypus novemcinctus	ENSDNOG00000006963	1 retrocopy	retro_dnov_1829,
Felis catus	ENSFCAG00000028088	1 retrocopy	retro_fcat_1789,
Myotis lucifugus	ENSMLUG00000015591	1 retrocopy	retro_mluc_1131 ,
Mus musculus	ENSMUSG00000056820	1 retrocopy	retro_mmus_393,
Otolemur garnettii	ENSOGAG00000005575	1 retrocopy	retro_ogar_91,
Ictidomys tridecemlineatus	ENSSTOG00000024989	1 retrocopy	retro_itri_259,