RetrogeneDB ID: retro_mluc_112

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429820:5329128..5330523(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028130
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CDK8
• Ensembl ID: ENSMLUG00000009176
• Aliases: None
• Description: cyclin-dependent kinase 8 [Source:HGNC Symbol;Acc:1779]

Sequence

>retro_mluc_112
ATGGACTATGACTTTAAAGTGAAGCTGAGCAGCGAGCGGGAGCGGGTCGAGGACCTGTTTGAATACGAGGGCTGCAAAGT
TGGCCGAGGCACTTATGGTCACGTCTACAAAGCCAAGAGGAAGGATGGAAAAGATGATAAAGACTATGCTTTAAAACAAA
TAGAAGGAACCGGAATATCTATGTCAACATGTAGAGAAATAGCATTACTTCGAGAGCTTAAGCATCCAAATGTCATCTCT
CTTCAAAAGGTGTTTCTATCTCATGCAGACAGGAAAGTATGGCTTCTGTTTGACTACGCTGAACATGACCTCTGGCATAT
AATCAAGTTTCACGGAGCTTCTAAAGCAAATAAGAAGCCAGTTCAGTTATCTCAGGGAATAGTGAAGTCACTATTATATC
AGATCCTAGATGGGATTCACTACCTGCATGATAACTGGGTGTTGCATAGAGATTTGAAACCTGCTAATATTTTAGTTATG
GGTGAAGGTCCTGAGCGAGGAAGAGTAAAAATTGCTGATATGGGCTTTGCCCGATTATTTAATTCACCTTTGAAGCCTTT
AGCAGATGTGGATCCAGTAGTTGTAACATCCTGGTACCGAGCTCCAGAATTACTTCTTGGAGCAAGACATTATACCAAAG
CTATTGATATTTGGGCTATAGGGTGTATATTTGCAGAGCTACTAACGTCAGAACCAATATTTCACTGTCAACAAGGGGAC
ATCAAAACTAGTAATCCTTATCACCATGACCAGCTGGACAGAATATTCACTGTAATGGGATTCCCTGCAGTTAAAGATTG
GAAAGATATAAAAAAGATGCCTGAATATTCAACATTAATGAAAGATTTCAGAAGAAATAGGTATACCAGCTGCAGCCTTA
TCAAGTATATGGAAAAACATAAAGTTAAACCGGATAGTAAAGCATTCCACTTGCTTCAGAAGTTGCTTACCATGGACCCA
GTAAAGCGAATTACCTCAGAACAGGCTATGCAGGATCCCTATTTCTTAGAAGATCCACTTCCTACATCAGATGTTTTTGC
CAGTTGTCAAATCCCTTACCCAAAACGAGAATTTTTAACAGAAGAAGAACCTGATGATAAAGGAGACAAAAAGAACCAGC
AGCAGCAACAGGGCAATAATCACACTAATGGAAATGGTCACCCAGGGAATCAAGATAGCAGTCATACACAGGGACCCCCG
TTGAAAAAAGTGAGAGTTGTTCCTCCTACCACTACCTCAGATGGACTGATCATGACCTCAGACTATCAGCGTTCTAATCC
ACATGCTGCCTATCCTAATCCTGGACCAAGCACATCACAGCCACAGAGCAGCATGGGCTACTCAACCACCTCCCAGCAGC
CTCCACACTACTCACATCAGACACACCGGTACTGA

Alignment

ORF - retro_mluc_112 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.77 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LQLLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQIL
          ..LLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFH.ASKANKKPVQL..G.VKSLLYQIL
Retrocopy IALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHGASKANKKPVQLSQGIVKSLLYQIL

Parental  DGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLL
          DGIHYLH.NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLAD.DPVVVT.WYRAPELLL
Retrocopy DGIHYLHDNWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADVDPVVVTSWYRAPELLL

Parental  GARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEH
          GARHYTKAIDIWAIGCIFAELLTSEPIFHC.Q.DIKTSNPYHHDQLDRIF.VMGFPA.KDW.DIKKMPE.
Retrocopy GARHYTKAIDIWAIGCIFAELLTSEPIFHCQQGDIKTSNPYHHDQLDRIFTVMGFPAVKDWKDIKKMPEY

Parental  STLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPTSDVF
          STLMKDFRRN.YT.CSLIKYMEKHKVKPDSKAFHLLQKLLTMDP.KRITSEQAMQDPYFLEDPLPTSDVF
Retrocopy STLMKDFRRNRYTSCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPVKRITSEQAMQDPYFLEDPLPTSDVF

Parental  AGCQIPYPKREFLTEEEPDDKGDKPIEKNQQQQQGNNHTNGTGHPGNQDSSHTQGPPLKKVRVVPPTTTS
          A.CQIPYPKREFLTEEEPDDKGDK...KNQQQQQGNNHTNG.GHPGNQDSSHTQGPPLKKVRVVPPTTTS
Retrocopy ASCQIPYPKREFLTEEEPDDKGDK---KNQQQQQGNNHTNGNGHPGNQDSSHTQGPPLKKVRVVPPTTTS

Parental  GGLIMTSDYQRSNPHAAYPNPGPSTSQPQSSMGYSTTSQQPPQYSHQTHRY
          .GLIMTSDYQRSNPHAAYPNPGPSTSQPQSSMGYSTTSQQPP.YSHQTHRY
Retrocopy DGLIMTSDYQRSNPHAAYPNPGPSTSQPQSSMGYSTTSQQPPHYSHQTHRY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_112 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000001443	1 retrocopy	retro_chof_1102,
Homo sapiens	ENSG00000132964	1 retrocopy	retro_hsap_2147,
Myotis lucifugus	ENSMLUG00000009176	1 retrocopy	retro_mluc_112 ,
Macaca mulatta	ENSMMUG00000014841	1 retrocopy	retro_mmul_1010,
Mus musculus	ENSMUSG00000029635	1 retrocopy	retro_mmus_1200,
Nomascus leucogenys	ENSNLEG00000014010	1 retrocopy	retro_nleu_2746,