RetrogeneDB ID: retro_meug_44

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_9854:16699..18769(+)
• Located in intron of: ENSMEUG00000002346

Retrocopy information

• Ensembl ID: ENSMEUG00000002361
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000012167
• Aliases: None
• Description: None

Sequence

>retro_meug_44
AACATGGCAGCCTCCACCACAGCCGGAAAGCAGAGGATCCCCAAAGTGGCAAAGGTGAAAAACAAAGCCCCTGCTGAAGT
GCAGATCACGGCAGAACAGCTTTTAAGGGAAGCTAAAGAAAGAGAGCTAGAGCTTCTGCCCCCATCTCCGCAACAGAAGA
TCACAGATGCAGAAGAATTCAGTGAATACACACTGAGGAAAAGGAAGATTTTTGAGGACAACATAAGGAGGAATAGGACC
GTGATGAGTAACTGGATCAAATATGCCCAATGGGAAGAGAATCTGAAAGAAATTCAAAGAGCCCGCTCCATCTACGAGCG
AGCCTTGGATGTCGACCACCGAAATATCACCCTCTGGCTACGATATGCAGAAATGGAAATGAAGAATCGACAAGTCAACC
ATGCCCGAAATATATGGGATCGGGCCATCACAGTGCTTCCCCGGGTCAACCAGTTCTGGCACAAATACACTTACATGGAG
GAGATGTTGGGGAATGTTGCTGGAGGCCGCCAAGTCTTTGAGCGCTGGATGGAATGGCAGCCCGAGGAGCAAGCCTGGCA
CTCCTATATCAACTTTGAACTGAGATATAAAGAGCTGAATCGGGCACGCGGCATTTACCAAAGATTTGTTCTCGTGCACC
CCCAGGTTACGAACTGGATCAAATATGCTAGCTTTGAAGAAAAACATGGCAATTTTGCTCATGCAAGGAAAGCATATGAA
AGAGCTGTGGACTTTTTTGGAGAGGAACACATGGATGAACATCTCTATGTGGCTTTTGCAAAATTTGAAGAAAGTCAGAA
AGAATTTGAACGGGCACAAGCCATCCACAAATATGCCCTGGACAGGATTTCCAAGCATGCCGCCCAAGAGCTCTTTAAAA
ATTACACAGTCTTTGAAAAGAAGTTTGGAGATAAGAGAGGTGTTGAAGACAGCATTGTGAGGAAACGGAGATTCCAGTAT
GAAGAGGAGGTGAAGGCCAATCCCCACAATTACGATGCCTGGTTTGATTATTTGCGATTGGTGGAACAGGATGACCAGGA
ACCAGACACTGTGCGAGAGGTGTATGAAAGGGCCATAGCCAACGTGCCTCCGATCCAAGAGAAGAGACACTGGAAGCGGT
ACATATACCTCTGGATCAACTATGCACTTTATGAAGAGTTGGAGGTCGAGGATCCAGACAGGACCAGACAGGTTTATCAA
GCTTGCCTGAAACTGATTCCTCACAAAAAGTTTACATTTGCTAAAATGTGGCTACTGTATGCTCAGTTTGAAATAAGACA
GAAAAATCTCCCCTTTGCCAGAAGAGCTTTGGGAACCTCTATTGGCAAGTGTCCCAAAAACAAATTGTTTCGAGGCTACA
TTGAATTGGAGCTTCAGCTTCGAGAATTTGACCGGTGCCTGAAACTTTATGAGAAGTTCCTGGAGTTTGCACCGGAAAAT
TGCACCGCATGGATCAAATTTGCCGAGTTAGAGACAATTCTCAGAGATATCGAGAGAGCCCGGGTGATCTATGAGTTAGC
TATTGGCCAACCACACTTGGACATACCAGAGGTTCTTTGGAAATCCTACCTGGATTTTGAAACTGAGCAAGAAGAATTTG
AGAAAACAAGAAGTCTCTACCGGAGATTGTTACAACGAACACAACATGTTAAGGTATGGATCAGTTTTGCCCACTTTGAG
CTGTCTGCAGGGAATGAAGAAAACATAACTCGATGCAGACAAATTTACGAAGAAGCCAACAAAATGATGAGAAACAGTGA
AGAGAAGGAAGAAAGACTCATGTTGTTAGAATCCTGGAGAAACTTTGAAGATGAATTTGGAACAGAGCCTCAAAAGGAGA
GAGTGGACAAACTCATGCCAGAGAAAGTGAAAAAGAGGAGAAAAATTCAGGCAGAAGGTGGGTCTGATGCTGGCTGGGAA
GAGTGCTACCATTACATGTTTCCAGAAGATGCAGCAAACCAACCCAACCTCAAACTGCTGGCCATGGCCAAGCTTTGGAA
GAAACGGCAGCAAGAGGAGGATGCTTTAGAGCAACACCCAGAGGAAGACATGGATGAGATCAAATCCTGA

Alignment

ORF - retro_meug_44 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.93 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNIRKNRTVISNWIKY
          VKNKAPAEVQITAEQLLREAKERELELLPP.PQQKITD.EE...Y.LRKRK.FEDNIR.NRTV.SNWIKY
Retrocopy VKNKAPAEVQITAEQLLREAKERELELLPPSPQQKITDAEEFSEYTLRKRKIFEDNIRRNRTVMSNWIKY

Parental  AQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTY
          AQWEE.LKEIQRARSIYERALDVD.RNITLWL.YAEMEMKNRQVNHARNIWDRAIT.LPRVNQFW.KYTY
Retrocopy AQWEENLKEIQRARSIYERALDVDHRNITLWLRYAEMEMKNRQVNHARNIWDRAITVLPRVNQFWHKYTY

Parental  MEEMLGNIAGGRQVFERWMEWQPEEQAWHSYINFELRYKEVDRARCIYERFVLVHPDVKNWIKYARFEEK
          MEEMLGN.AGGRQVFERWMEWQPEEQAWHSYINFELRYKE..RAR.IY.RFVLVHP.V.NWIKYA.FEEK
Retrocopy MEEMLGNVAGGRQVFERWMEWQPEEQAWHSYINFELRYKELNRARGIYQRFVLVHPQVTNWIKYASFEEK

Parental  HGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIF
          HG.FAHARK.YERAV.FFG.EHMDEHLYVAFAKFEE.QKEFER...I.KYALDRISK..AQELFKNYT.F
Retrocopy HGNFAHARKAYERAVDFFGEEHMDEHLYVAFAKFEESQKEFERAQAIHKYALDRISKHAAQELFKNYTVF

Parental  EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESD-AEPDTVREVYERAIANVPPIQEK
          EKKFGD.RG.ED.IV.KRRFQYEEEVKANPHNYDAWFDYLRLVE.D..EPDTVREVYERAIANVPPIQEK
Retrocopy EKKFGDKRGVEDSIVRKRRFQYEEEVKANPHNYDAWFDYLRLVEQDDQEPDTVREVYERAIANVPPIQEK

Parental  RHWKRYIYLWINYALYEELEAKDPERTRQVYQACLKLIPHKKFTFAKIWLLYAQFEIRQKNLPFARRALG
          RHWKRYIYLWINYALYEELE..DP.RTRQVYQACLKLIPHKKFTFAK.WLLYAQFEIRQKNLPFARRALG
Retrocopy RHWKRYIYLWINYALYEELEVEDPDRTRQVYQACLKLIPHKKFTFAKMWLLYAQFEIRQKNLPFARRALG

Parental  TSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFAPENCTSWIKFAELETILGDIERARAIYELAI
          TSIGKCPKNKLF..YIELELQLREFDRC.KLYEKFLEFAPENCT.WIKFAELETIL.DIERAR.IYELAI
Retrocopy TSIGKCPKNKLFRGYIELELQLREFDRCLKLYEKFLEFAPENCTAWIKFAELETILRDIERARVIYELAI

Parental  SQPRLDMPEVLWKSYIDFEIEQEESEKTRSLYRRLLQRTQHVKVWISFAQFELSAGNEESLTKCRQIYEE
          .QP.LD.PEVLWKSY.DFE.EQEE.EKTRSLYRRLLQRTQHVKVWISFA.FELSAGNEE..T.CRQIYEE
Retrocopy GQPHLDIPEVLWKSYLDFETEQEEFEKTRSLYRRLLQRTQHVKVWISFAHFELSAGNEENITRCRQIYEE

Parental  ANKTMRNCEEKEERLMLLESWRNFEDEFGTEAHKDRVDKLMPEKVKKRRKVQAEDGSDAGWEEYYDYIFP
          ANK.MRN.EEKEERLMLLESWRNFEDEFGTE..K.RVDKLMPEKVKKRRK.QAE.GSDAGWEE.Y.Y.FP
Retrocopy ANKMMRNSEEKEERLMLLESWRNFEDEFGTEPQKERVDKLMPEKVKKRRKIQAEGGSDAGWEECYHYMFP

Parental  EDAANQPNLKLLAMAKLWKKQQQEKDAAEQDLDKDVDESES
          EDAANQPNLKLLAMAKLWKK.QQE.DA.EQ....D.DE..S
Retrocopy EDAANQPNLKLLAMAKLWKKRQQEEDALEQHPEEDMDEIKS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_44 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_44 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000012167	1 retrocopy	retro_meug_44 ,
Myotis lucifugus	ENSMLUG00000016513	1 retrocopy	retro_mluc_1434,
Mus musculus	ENSMUSG00000001767	1 retrocopy	retro_mmus_207,
Rattus norvegicus	ENSRNOG00000010587	1 retrocopy	retro_rnor_2345,