RetrogeneDB ID: retro_meug_1130

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold30004:8603..9041(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000001005
• Aliases: None
• Description: None

Sequence

>retro_meug_1130
ACCCCTGTGACGACTTATGCTCAGCTGGAAAGTCTGATCAATAAATGGAGTCTCGAACTGGAGGATCAAGAGAAACACTT
CCTTCAGCAGGCCACTCAGGTGAATGCTTGGGACCGGACCTTAATTGAGAATGGTGAGAAGATCACTTCTTTACACAGAG
AAGCAGAGAAAGTGAAGCTGGATCAGAAAAGGTTGGACCAAGAATTAGACTTTATCCTGTCACAGCAGAAAGAACTGGAG
GACCTGTTGGCCCCTCTAGAAGAGGCAATGAAGGAGCAAAGTGGGACTATCTATCTGCAGCATGCAGATGAGGAGCGAGA
GAAAACTTATAAACTAGCAGAGAATATAGATGCTCAACTGAAGAGCATGGCCCAAGACCTCAAGGACATTACTGAGCACC
TGAATATGTCTGGAGGGCCTCCTGACACCATGACCCCC

Alignment

ORF - retro_meug_1130 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.15 %
• Parental protein coverage: 99.32 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TPVMTYAQLESLINKWSLELEDQEKHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELD
          TPV.TYAQLESLINKWSLELEDQEKHFLQQATQVNAWDRTLIENGEKITSLHRE.EKVKLDQKRLDQELD
Retrocopy TPVTTYAQLESLINKWSLELEDQEKHFLQQATQVNAWDRTLIENGEKITSLHREAEKVKLDQKRLDQELD

Parental  FILSQQKELEDLLVPLEEAVKEQSGTIYLQHADEEREKTYKLAENIDAQLKRMAQDLKEIIEHLNMAGGP
          FILSQQKELEDLL.PLEEA.KEQSGTIYLQHADEEREKTYKLAENIDAQLK.MAQDLK.I.EHLNM.GGP
Retrocopy FILSQQKELEDLLAPLEEAMKEQSGTIYLQHADEEREKTYKLAENIDAQLKSMAQDLKDITEHLNMSGGP

Parental  PDTTDP
          PDT..P
Retrocopy PDTMTP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1130 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1130 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000017963	1 retrocopy	retro_cfam_218,
Dasypus novemcinctus	ENSDNOG00000001467	1 retrocopy	retro_dnov_1108,
Felis catus	ENSFCAG00000001984	1 retrocopy	retro_fcat_120,
Macropus eugenii	ENSMEUG00000001005	1 retrocopy	retro_meug_1130 ,
Nomascus leucogenys	ENSNLEG00000013865	1 retrocopy	retro_nleu_2076,
Pteropus vampyrus	ENSPVAG00000001787	1 retrocopy	retro_pvam_694,
Vicugna pacos	ENSVPAG00000003649	1 retrocopy	retro_vpac_448,