RetrogeneDB ID: | retro_gmor_8 | ||
Retrocopy location | Organism: | Cod (Gadus morhua) | |
| Coordinates: | GeneScaffold_1510:343125..344346(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSGMOG00000020366 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | fzd4 | ||
| Ensembl ID: | ENSGMOG00000014266 | ||
| Aliases: | None | ||
| Description: | frizzled homolog 4 [Source:ZFIN;Acc:ZDB-GENE-990415-217] |
Retrocopy-Parental alignment summary:
>retro_gmor_8
GGCTCAGGCCACTCGGGCGGCGTCCCGGGGTCCTGCGAGAACCCTGAGAAGTTCCAGTACGTGGAGAAGAGCCAGTCGTG
CGCGCCGCGCTGCTCCTCGGCCGTGGACGTGTTCTGGTCGCGGCGGGACAAGGACTTCGCCTTCGTCTGGATGACGGTGT
GGTCCACGCTGTGCTTCGTGTCCACCGCCTTCACCGTGCTCACCTTCCTGCTGGACCCGCACCGCTTCCAGTACCCCGAG
CGGCCCATCATCTTCCTCTCCATGTGCTACAACGTCTACTCGGTGGCCTTCATCATCCGCTCGGTGGCCGGCGCGGAGAA
CATCGCCTGCGACCGGGAGAACGGCGAGCTGTACATCATCCAGGAGGGGCTGGAGTCCACGGGCTGCACCATCGTCTTCC
TCATCCTCTACTACTTCGGCATGGCCTCGTCCATCTGGTGGGTGATCCTCACGCTCACCTGGTTCTTGGCCGCCGGCAAG
AAGTGGGGCCACGAGGCCATCGAGGCCCACAGCAACTACTTCCACATGGCGGCGTGGGGCGTGCCCGCCCTCAAGACCAT
CGTCATCCTCACCATGAGGAAGGTGGCGGGCGACGAGCTGACGGGCCTGTGCTACGTGGGCAGCATGGACGCGGCCGCCC
TCACCGGCTTCGTGCTCGTCCCCCTGGCCTGCTACCTGGTGGTGGGCACCTCCTTCATCCTGACGGGCTTCGTGGCGCTC
TTCCACATCCGCCGCGTGATGAAGACGGAGGGCACCAACACGGAGAAGCTGGAGAAGCTGATGGTGAAGATCGGCGTGTA
CTCCATCCTGTACACGGTGCCCGCCACCTGCGTGATCGTGTGCTACTTCTACGAGCGCCTCAACATGGACTACTGGCGCT
CCCGCGGCCTGGAGGCCCGCTGCGTCTCGCTGCCGGGCCGGAGGAACGAGGGCTGCTCGCTGGACGCCTCGGTGCCGGCG
GTGGCCGTGTTCATGCTGAAGACCTTCATGTCGCTGGTGGTGGGCATCACCAGCGGCGTGTGGGTGTGGAGCTCCAAGAC
GCTGCAGACCTGGCAGCTGCTGTGCAGCAGGAAGCTGGCGGCAGACCGGACGCCCGGCGGGGGCAGGAAGCCGTGCGGGG
GGGTCACCTGCGGCAGCACGCACTGCCACTACAAGGCCCCCCCCGCCGTGGTCATGCACATGGCCAAGCCGGACCCCCAC
TCGGACAACCCCACGCACGTG
ORF - retro_gmor_8 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 59.23 % |
| Parental protein coverage: | 52.9 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | PDQYAWVRRSHSCALQCGYDSGLY-RRGAKVFTDAWMAAWAVMCFLSTTLTVLTFLLDSQRFSYPERPII |
| P.....V..S.SCA..C.........R..K.F...WM..W...CF.ST..TVLTFLLD..RF.YPERPII | |
| Retrocopy | PEKFQYVEKSQSCAPRCSSAVDVFWSRRDKDFAFVWMTVWSTLCFVSTAFTVLTFLLDPHRFQYPERPII |
| Parental | FLSMCCNLYSVAYLVRLTLGRERVSCDLEEAAVPVLVQEGLKSTGCAIVFLLLYFFGMASSLWWVILTLT |
| FLSMC.N.YSVA...R...G.E...CD.E........QEGL.STGC.IVFL.LY.FGMASS.WWVILTLT | |
| Retrocopy | FLSMCYNVYSVAFIIRSVAGAENIACDRENGEL-YIIQEGLESTGCTIVFLILYYFGMASSIWWVILTLT |
| Parental | WFLAAGLKWGHEAIEMHSSYFHIAAWAIPAVKTIVILIMRLVDADDLTGLCYVGNLQQEALTGFVVAPLA |
| WFLAAG.KWGHEAIE.HS.YFH.AAW..PA.KTIVIL.MR.V..D.LTGLCYVG.....ALTGFV..PLA | |
| Retrocopy | WFLAAGKKWGHEAIEAHSNYFHMAAWGVPALKTIVILTMRKVAGDELTGLCYVGSMDAAALTGFVLVPLA |
| Parental | TYLLIGTLFICAGLVALFKIRSNLQKDGAKTDKLERLMVKIGVFSVLYTVPASVVIGCYLYQ---LSHWG |
| .YL..GT.FI..G.VALF.IR......G..T.KLE.LMVKIGV.S.LYTVPA..VI.CY.Y.......W. | |
| Retrocopy | CYLVVGTSFILTGFVALFHIRRVMKTEGTNTEKLEKLMVKIGVYSILYTVPATCVIVCYFYERLNMDYWR |
| Parental | EFGSAAR |
| ..G..AR | |
| Retrocopy | SRGLEAR |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Gadus morhua was not studied using RNA-Seq expression data.
Gadus morhua was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_gmor_8 retrocopy.
Gadus morhua was not studied using FANTOM5 data.
retro_gmor_8 was not experimentally validated.
Retrocopy orthology:
Gadus morhua does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gadus morhua | ENSGMOG00000014266 | 1 retrocopy |
retro_gmor_8 ,
|
| Takifugu rubripes | ENSTRUG00000006345 | 2 retrocopies |