RetrogeneDB ID: retro_ggor_43

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: X:129316611..129317094(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000026822
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: FAM195A
• Ensembl ID: ENSGGOG00000013784
• Aliases: None
• Description: None

Sequence

>retro_ggor_43
ATGTACACCATCATCAACGGGCCCAGCAAGCTGGTCGCGCAGCGCCGCACAGGTCTCACGCAGCAGCAGGTGAAGGGCCA
GCTCCAGGAGCTCCTGAAAAGCCGGCAGCCCGCGCCGCCGACCTTGCAGCCCCAGCGGGCGCAGCCCTTCGCGCAGCCGC
TGGGACCCTGGCCCCTGTCGAGCCCAGGGCCAAGGCTTGTGTTCAATCGTGTGAATGGCCGGCGGGACCCCTCCAAGTCC
CCATCCCTCCAGGGGACCCAGGAGACCTACACACTGGCCCACAAGGAGAATGTCCGCTTTGTGTCCGAAGCCTGGCAGCA
GGTGCGGCAGCAGCTGGATGGTGGCCCAGCCAGTGAGGGCGGGCCAAGGCCTGTGCAGTACGTGGAGAGGATCCCCAATC
CCCGGCTGCAGAACTTCGTGCCCATTGACTTGGACGAGTGGTGGGCGCAGCACTTCCTGGCTAGAATCACCAGCTGTTCC
TAG

Alignment

ORF - retro_ggor_43 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.5 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MYTITKGPSKLVAQRRTGPTQQQVEGRLGELLKCRHPAPPTSQPPRAQPFAQPPGPWPLSSPGPRLVFNR
          MYTI..GPSKLVAQRRTG.TQQQV.G.L.ELLK.R.PAPPT.QP.RAQPFAQP.GPWPLSSPGPRLVFNR
Retrocopy MYTIINGPSKLVAQRRTGLTQQQVKGQLQELLKSRQPAPPTLQPQRAQPFAQPLGPWPLSSPGPRLVFNR

Parental  VNGRRAPSTSPSLEGTQETYTVAHEENVRFVSEAWQQVQQQLDGGPAGEGGPRPVQYVERTPNPRLQNFV
          VNGRR.PS.SPSL.GTQETYT.AH.ENVRFVSEAWQQV.QQLDGGPA.EGGPRPVQYVER.PNPRLQNFV
Retrocopy VNGRRDPSKSPSLQGTQETYTLAHKENVRFVSEAWQQVRQQLDGGPASEGGPRPVQYVERIPNPRLQNFV

Parental  PIDLDEWWAQQFLARITSCS
          PIDLDEWWAQ.FLARITSCS
Retrocopy PIDLDEWWAQHFLARITSCS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	5.37 RPM
SRP007412_cerebellum	0.00 RPM	7.45 RPM
SRP007412_heart	0.03 RPM	14.42 RPM
SRP007412_kidney	0.00 RPM	13.45 RPM
SRP007412_liver	0.00 RPM	10.05 RPM
SRP007412_testis	0.00 RPM	3.94 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_43 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_43 has 0 orthologous retrocopies within eutheria group .

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000011979	1 retrocopy	retro_cjac_932,
Homo sapiens	ENSG00000172366	1 retrocopy	retro_hsap_4901,
Gorilla gorilla	ENSGGOG00000013784	1 retrocopy	retro_ggor_43 ,
Nomascus leucogenys	ENSNLEG00000008117	1 retrocopy	retro_nleu_1269,
Pan troglodytes	ENSPTRG00000007548	1 retrocopy	retro_ptro_3268,
Sus scrofa	ENSSSCG00000007995	1 retrocopy	retro_sscr_433,