RetrogeneDB ID: retro_ggor_2832

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 9:9105514..9105688(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENSG00000215241
• Ensembl ID: ENSGGOG00000027169
• Aliases: None
• Description: None

Sequence

>retro_ggor_2832
TCTAATGTGTCAATGAATAGCCTCACAGATTCCAGTGGCAGGTTTTCTAGATCTTCCTGGTTTGAGACAGAAAAGAATAA
CTTCGGCCAAATGCGGTGGTTCACGCCTGTAATCCCAACACTTTGGGAGGCTGAGGCGCGCGGATTGCCTGAGGTCAGGA
GTTCAAGACCAGCC

Alignment

ORF - retro_ggor_2832 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.72 %
• Parental protein coverage: 63.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SNVESKKWVREGSPQRNMKYFYTEVSRSGQAQWLTPVIPALWEAEAGGSPEVRSSRPA
          SNV.................F.TE....GQ..W.TPVIP.LWEAEA.G.PEVRSSRPA
Retrocopy SNVSMNSLTDSSGRFSRSSWFETEKNNFGQMRWFTPVIPTLWEAEARGLPEVRSSRPA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.10 RPM	0.05 RPM
SRP007412_cerebellum	0.00 RPM	0.35 RPM
SRP007412_heart	0.00 RPM	0.16 RPM
SRP007412_kidney	0.00 RPM	0.12 RPM
SRP007412_liver	0.00 RPM	0.05 RPM
SRP007412_testis	0.00 RPM	0.00 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2832 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2832 has 0 orthologous retrocopies within eutheria group .

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000020103	14 retrocopies	retro_cjac_3387, retro_cjac_3463, retro_cjac_3466, retro_cjac_3471, retro_cjac_3522, retro_cjac_3527, retro_cjac_3574, retro_cjac_3575, retro_cjac_3586, retro_cjac_3699, retro_cjac_3705, retro_cjac_3737, retro_cjac_3750, retro_cjac_3753,
Gorilla gorilla	ENSGGOG00000023636	1 retrocopy	retro_ggor_688,
Gorilla gorilla	ENSGGOG00000027169	1 retrocopy	retro_ggor_2832 ,