RetrogeneDB ID: retro_fcat_797

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: B2:127714302..127715078(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSFCAG00000013768
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSFCAG00000027005
• Aliases: None
• Description: None

Sequence

>retro_fcat_797
TCAATTTCACCAGCTGGTTATTCAGGTGCTGGCCCAGTAGGGTTTCCTGTCCAACCCCAGCCTGTGTATAATCAACCAGG
TGCACCTGCAGGGGTACCATGGATGCCAGCACCACACCTCCATCAGGCTGTCCACCCGGATTGGAGTGTTTAAGTCAGAT
AGATCAGATACTGGTTCATCAACAAATTGAGCTTCTGGAAGTCATAGCAGGTTTTGAAACTAATAACAAATATGAAATTA
AGAACAGCTTTGGACAGAAGATTTACTCTGCAGCAGAGGATACAGACTGCTGTACCCGGAATTGCTGTGGGGTTTCTCGG
CCTTTTACCGTGAGGATTATTGACAATATGGGCCAAGAAGCTATAACTCTGGAGAGACCACTAAGGTGTGACAGCCGTTG
TTGCCCTTGCTGCCTTCAGGAGATTGAAGTCCACGCTCCTCCTCGTGTACCTGTAGGTTATGTTACTCAGACCCGGCATC
CATGCCTGCCAAGGTTTACAGTTCAAAATGAGAGGAGAGAGGATGCACTAAAAATTATTGGTCCATGTGTTGGGTGCAGC
TGTTGTGCAGATGTTGACTTTGAGATTAAATCTCTGGATGAAGAAACTACAGTTGGCAAGATTTCCAAGCAGTGGACTGG
TTTTGGAGAGAGGCATTTACAGATGCTGATAGCTTTGGTATCCAGCTCCCTTTAGACCTTGATGTGAAAATGAAAGCCGT
AATGCTTGGTGTATGTTTCCTCATTGATTTCACGTTTTTTTGAAAGGAGTGGAAAC

Alignment

ORF - retro_fcat_797 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.69 %
• Parental protein coverage: 80.43 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  SIPPAGYSGAGPVGFPVQHQPVYNQPGGPAGVPWMPAP-PPPSGCPPGLEYLSQIDQILIHQQIELLEVI
          SI.PAGYSGAGPVGFPVQ.QPVYNQPG.PAGVPWMPAP..PPSGCPPGLE.LSQIDQIL.HQQIELLEVI
Retrocopy SISPAGYSGAGPVGFPVQPQPVYNQPGAPAGVPWMPAP<TPPSGCPPGLECLSQIDQILVHQQIELLEVI

Parental  TGFETNNKYEIKNSFGQKIYFAVEDTDCCTRNCCGASRPFTMRIIDNMGQEVITLERPLRCDSCCCPCCL
          .GFETNNKYEIKNSFGQKIY.A.EDTDCCTRNCCG.SRPFT.RIIDNMGQE.ITLERPLRCDS.CCPCCL
Retrocopy AGFETNNKYEIKNSFGQKIYSAAEDTDCCTRNCCGVSRPFTVRIIDNMGQEAITLERPLRCDSRCCPCCL

Parental  QEIEVHAPPGVPVGYVTQTWHPCLPRFTIQNERREDVLKIIGPCVVCSCCADVDFEIKSLDEETIVGKIS
          QEIEVHAPP.VPVGYVTQT.HPCLPRFT.QNERRED.LKIIGPCV.CSCCADVDFEIKSLDEET.VGKIS
Retrocopy QEIEVHAPPRVPVGYVTQTRHPCLPRFTVQNERREDALKIIGPCVGCSCCADVDFEIKSLDEETTVGKIS

Parental  KQWTG-FVREAFTDADNFGIQFPLDLDVKMKAVMLGACFLIDF-MFFERSGN
          KQWTG.F.REAFTDAD.FGIQ.PLDLDVKMKAVMLG.CFLIDF..FFERSGN
Retrocopy KQWTG<FWREAFTDADSFGIQLPLDLDVKMKAVMLGVCFLIDF>RFFERSGN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	1.84 RPM
SRP017611_kidney	0.00 RPM	24.94 RPM
SRP017611_liver	0.00 RPM	3.34 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_797 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_797 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000027005	1 retrocopy	retro_fcat_797 ,
Myotis lucifugus	ENSMLUG00000008749	1 retrocopy	retro_mluc_1779,
Monodelphis domestica	ENSMODG00000021248	2 retrocopies	retro_mdom_1443, retro_mdom_1597,
Mus musculus	ENSMUSG00000032369	1 retrocopy	retro_mmus_462,
Rattus norvegicus	ENSRNOG00000033412	1 retrocopy	retro_rnor_1962,