RetrogeneDB ID: retro_etel_2129

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_70976:880..1108(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000018816
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: KXD1
• Ensembl ID: ENSETEG00000003390
• Aliases: None
• Description: KxDL motif containing 1 [Source:HGNC Symbol;Acc:28420]

Sequence

>retro_etel_2129
GATGACGTCCACACCATCACCCTGGCCCAGAAGAACATGCTGGACCGGTTGGAGAAGGCCAATGAGATGCTGCTGAACTT
CAAGAACCTGTCAAGTGCCCACCTGCAGCAGATGAACGAGCACTCCCTGCATCACACCTGCACCCTGGTGGAGGTGAAGC
GGGACCTGGACGGCATCGGCAGGATGCGGACCCTGAAAGGGGAGCTGGCTCAGCAGCACCCCGAAGCC

Alignment

ORF - retro_etel_2129 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.92 %
• Parental protein coverage: 71.96 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DDVNAIILAQKNMLDRFEKTNEMLLNFNNLSSARLQQMNERFLHHTRTLVEMKRDLDSIFRRVRTLKGKL
          DDV..I.LAQKNMLDR.EK.NEMLLNF.NLSSA.LQQMNE..LHHT.TLVE.KRDLD.I..R.RTLKG.L
Retrocopy DDVHTITLAQKNMLDRLEKANEMLLNFKNLSSAHLQQMNEHSLHHTCTLVEVKRDLDGI-GRMRTLKGEL

Parental  ARQHPEA
          A.QHPEA
Retrocopy AQQHPEA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_2129 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000010545	1 retrocopy	retro_btau_689,
Echinops telfairi	ENSETEG00000003390	2 retrocopies	retro_etel_1213, retro_etel_2129 ,
Macropus eugenii	ENSMEUG00000013150	1 retrocopy	retro_meug_2148,
Monodelphis domestica	ENSMODG00000003489	1 retrocopy	retro_mdom_1623,
Mus musculus	ENSMUSG00000055553	6 retrocopies	retro_mmus_1117, retro_mmus_3557, retro_mmus_799, retro_mmus_800, retro_mmus_802, retro_mmus_804,
Rattus norvegicus	ENSRNOG00000019971	2 retrocopies	retro_rnor_2808, retro_rnor_812,