RetrogeneDB ID: retro_etel_1415

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_262290:14271..14602(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZNHIT3
• Ensembl ID: ENSETEG00000018407
• Aliases: None
• Description: zinc finger, HIT-type containing 3 [Source:HGNC Symbol;Acc:12309]

Sequence

>retro_etel_1415
TGCAACCCTGAAACGCACCCTACAAAGAAAAAAAGAAATTCATTCTTTCCTACAAAAAGTACAAAGCCTGTGGAAAACCA
AGACGATGAGTCATCGGTAGCCGATTTTCTCAATAGTGATGAGGAAGAGGGACAGAGTTTCCCTGAAGAATTTAAAAAAT
CTGGGGGACTCAGCGCCACTGAGGAGCTTACTGCTGAACCCACACCTACGACAGTTGATGGTCAGCCTTGACGAGGGAGA
CGACAAAGCAAAGCTCATGAGAGCTTATATGCTAGAGCCCTTGTTTGTGGAGTTCACAGGACTACTGGTTAAGGCCGTGA
AACTGGGGCCT

Alignment

ORF - retro_etel_1415 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.78 %
• Parental protein coverage: 71.43 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  CNPETHPTRKKRNSSFPTKTTKPVENQDNESSVADFLNSDEEE-DRVSLQNLKNLGESAPLRSLLLNPHL
          CNPETHPT.KKRNS.FPTK.TKPVENQD.ESSVADFLNSDEEE.DRVSL.NLKNLG.SAPLRSLLLNPHL
Retrocopy CNPETHPTKKKRNSFFPTKSTKPVENQDDESSVADFLNSDEEE>DRVSLKNLKNLGDSAPLRSLLLNPHL

Parental  RQLMVSLDQGDDKAKLMRAYMQEPLFVEFADCCLRAVEPAP
          RQLMVSLD.GDDKAKLMRAYM.EPLFVEF......AV...P
Retrocopy RQLMVSLDEGDDKAKLMRAYMLEPLFVEFTGLLVKAVKLGP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1415 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000012672	1 retrocopy	retro_btau_1218,
Dasypus novemcinctus	ENSDNOG00000011745	1 retrocopy	retro_dnov_1037,
Echinops telfairi	ENSETEG00000018407	1 retrocopy	retro_etel_1415 ,
Myotis lucifugus	ENSMLUG00000013155	1 retrocopy	retro_mluc_1100,
Macaca mulatta	ENSMMUG00000007918	1 retrocopy	retro_mmul_938,