Parental gene:

TCM_001730

Aliases:None
Description:Multiprotein bridging factor 1B
Organism:Cacao (Theobroma cacao)
Coordinates:1:9096687..9100545(+)


>TCM_001730
ATGTCAGGAGTCGGACCAATCTCGCAGGACTGGGAACCCGTGGTGATCCGCAAGAAGGCTCCCAACGCCGCTGCCAAGCG
TGACGAGAAAGCCGTCAACGCCGCTCGACGAGCCGGCGCTGAGGTCGAAACCGTTAAAAAAGCTACTGCTGGGACAAATA
AAGCTGCCTCTAGCAGCACCACTTTAAACACAAGGAAGTTGGATGATGAGACAGAGAACCTTGCTCATGACCGAATCTCC
TCCGATCTGAAGAAAAATATAATGCAAGCTCGGATGGATAAGAAGATGACCCAGGCTCAACTTGCTCAAATGATCAATGA
AAAGCCACAAGTTATTCAGGAATATGAATCTGGGAAAGCTATTCCAAATCAACAGATAATTTCCAAGCTGGAGAGGGCTC
TCGGGACCAAACTTCGTGGGAAGAAATGA

Species Parental gene accession Homology type Retrogenes number
Brachypodium distachyon BRADI2G06560 ortholog_many2many 1 retrogene
retro_bdis_21,
Medicago truncatula MTR_2g084220 ortholog_one2many 1 retrogene
retro_mtru_80,
Oryza brachyantha OB08G20790 ortholog_one2many 1 retrogene
retro_obra_22,
Oryza barthii OBART08G12410 ortholog_one2many 1 retrogene
retro_obar_10,
Oryza glumaepatula OGLUM08G13370 ortholog_one2many 1 retrogene
retro_oglu_20,
Oryza meridionalis OMERI08G10430 ortholog_one2many 1 retrogene
retro_omer_26,
Oryza nivara ONIVA08G13070 ortholog_one2many 1 retrogene
retro_oniv_14,
Oryza punctata OPUNC08G11340 ortholog_one2many 1 retrogene
retro_opun_15,
Oryza glaberrima ORGLA08G0109300 ortholog_one2many 1 retrogene
retro_ogla_35,
Oryza rufipogon ORUFI08G14100 ortholog_one2many 1 retrogene
retro_oruf_7,
Oryza sativa japonica OS08G0366100 ortholog_one2many 1 retrogene
retro_osat_47,
Physcomitrella patens PP1S96_94V6 ortholog_many2many 1 retrogene
retro_ppat_19,
Prunus persica PRUPE_ppa013074mg ortholog_one2one 1 retrogene
retro_pper_2,
Sorghum bicolor Sb07g014940 ortholog_one2many 1 retrogene
retro_sbic_34,
Arabidopsis lyrata scaffold_503053.1 ortholog_one2many 1 retrogene
retro_alyr_11,
Triticum aestivum Traes_3AS_719D37CCA ortholog_many2many 1 retrogene
retro_taes_74,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tcac_24 50.55 64.08
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Download FASTA sequences of all TCM_001730 retrocopies