Parental gene:

HNRNPDL, ENSSTOG00000013979

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein D-like [Source:HGNC Symbol;Acc:5037]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393548.1:2063141..2067953(+)


>ENSSTOG00000013979
ATGGAGGTCCCGCCCCGGCTTTCCCATGTGCCGCCGCCATTGTTCCCCTCCGCTCCCGCTACTTTAGCCTCCCGTAGCAT
TTCCCATTGGCGGCCGAGGGCGCCACGGCAGCTCGCCCCACTCCTCCCTTCCCTCGCTGCCGGCTCCGCCCGGCAGGGGG
CGCGCCGGACCCAGCGCCACGTCACCGCCCAGCAGCCCTCCCGATTGGCGGGCGGGGCGGCTATAAAGGGAGGGCGCAGG
CGGCGCCCGGATCTCTTCCGCCGCCATTTTAAATCCAGCTCCATACAACGCTCCGCCGCCGCTGCTGCCGGGACCAGGAC
TGCGCGCCAGCACCCCACTGCCGACAGCTCCGCCACTATGGAGGACATGAACGAGTACAGCAACATAGAAGAATTCGCAG
AGGGATCCAAGATCAACGCGAGCAAGAATCAGCAGGATGACGGTAAAATGTTTATTGGAGGCTTGAGCTGGGATACGAGC
AAGAAAGATCTGACTGAATATTTGTCTCGATTTGGGGAAGTTGTAGACTGTACGATTAAAACAGATCCAGTCACTGGAAG
ATCAAGAGGATTTGGATTTGTGCTTTTTAAAGATGCTGCTAGTGTTGATAAGGTTTTGGAACTGAAAGAACACAAACTGG
ATGGCAAATTGATAGACCCCAAAAGGGCCAAAGCTTTGAAAGGGAAAGAACCCCCTAAAAAGGTTTTTGTGGGTGGATTG
AGCCCAGATACTTCTGAAGAACAAATTAAAGAATATTTTGGAGCCTTTGGAGAGATTGAAAATATTGAACTTCCCATGGA
TACAAAAACAAACGAAAGAAGGGGATTTTGTTTTATCACATATACAGATGAAGAGCCAGTAAAGAAATTGTTAGAAAGCA
GATATCATCAAATTGGTTCTGGGAAGTGTGAAATCAAAGTTGCACAGCCCAAAGAGGTATATAGGCAGCAACAGCAACAA
CAAAAAGGAGGAAGAGGTGCTGCAGCTGGTGGGAGAGGTGGTACCAGGGGTCGTGGCCGAGGTCAGGGCCAAAACTGGAA
CCAAGGATTTAATAACTATTATGATCAAGGATATGGAAATTACAATAGTGCCTATGGTGGTGATCAGAACTATAGTGGCT
ATGGCGGATATGATTATACTGGGTATAACTATGGGAACTATGGATATGGACAGGGATATGCAGACTACAGTGGTCAACAG
AGCACTTACGGCAAGGCTTCTCGAGGGGGTGGCAATCACCAAAATAATTACCAGCCATACTAG

Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015197 ortholog_one2one 1 retrogene
retro_cjac_2589,
Dasypus novemcinctus ENSDNOG00000003887 possible_ortholog 7 retrogenes
retro_dnov_1175, retro_dnov_1182, retro_dnov_144, retro_dnov_1603, retro_dnov_31, retro_dnov_723, retro_dnov_930,
Felis catus ENSFCAG00000000455 ortholog_one2one 1 retrogene
retro_fcat_1568,
Macropus eugenii ENSMEUG00000011454 ortholog_one2many 7 retrogenes
retro_meug_1252, retro_meug_1378, retro_meug_1491, retro_meug_1971, retro_meug_2165, retro_meug_249, retro_meug_766,
Monodelphis domestica ENSMODG00000011916 possible_ortholog 6 retrogenes
retro_mdom_1496, retro_mdom_1789, retro_mdom_1951, retro_mdom_2017, retro_mdom_546, retro_mdom_981,
Otolemur garnettii ENSOGAG00000002501 possible_ortholog 4 retrogenes
retro_ogar_2717, retro_ogar_2791, retro_ogar_437, retro_ogar_693,
Sarcophilus harrisii ENSSHAG00000013616 possible_ortholog 3 retrogenes
retro_shar_297, retro_shar_527, retro_shar_625,
Ictidomys tridecemlineatus ENSSTOG00000006202 within_species_paralog 3 retrogenes
retro_itri_1723, retro_itri_448, retro_itri_717,
Ictidomys tridecemlineatus ENSSTOG00000006551 other_paralog 8 retrogenes
retro_itri_1291, retro_itri_1567, retro_itri_190, retro_itri_354, retro_itri_439, retro_itri_446, retro_itri_456, retro_itri_515,
Ictidomys tridecemlineatus ENSSTOG00000025125 other_paralog 4 retrogenes
retro_itri_1444, retro_itri_1878, retro_itri_952, retro_itri_98,
Tupaia belangeri ENSTBEG00000002817 possible_ortholog 7 retrogenes
retro_tbel_2079, retro_tbel_2283, retro_tbel_2608, retro_tbel_2874, retro_tbel_3344, retro_tbel_4302, retro_tbel_4405,
Tursiops truncatus ENSTTRG00000001793 ortholog_one2one 2 retrogenes
retro_ttru_1486, retro_ttru_744,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_1177 86.06 77.38
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Download FASTA sequences of all ENSSTOG00000013979 retrocopies