Parental gene:

ENSDNOG00000003887

Aliases:None
Description:None
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_4373:9314..12212(-)


>ENSDNOG00000003887
ATGGAGGTCCCGCCCCGGCTTTCCCATGTGCCGCCGCCATTGTTTCCCTCCGCTCCCGCTACTTTAGCTTCCCGCAGCCT
CTCCCATTGGCGGCCCCGGGCGCCGCGGCAGCTCGCCCCGCTCCTCCCTTCGCTCGCTCCCAGCTCTGCCCGGCAGGGGG
CGCGCCGGGCCCAGCGCCACGTCACCGCCCAGCAGCCCTCCCGATTGGCGGGCGGGGCGGCTATAAAGGGAGGGCGCAGG
CGGCGCCCGGATCTCTTCCGCCGCCATTTTAAATCCAGCTCCATACAACGCTCCGCTGCCGCCGCTACCGGGACTCGGTC
TGCGCGCCAGCACCCCCCTGCCGACAGCTCCGCCACCATGGAGGACATGAACGAGTACAGCAACATAGAGGAATTCGCAG
AGGGATCCAAGATAAATGCGAGCAAGAATCAGCAGGATGACGGTAAAATGTTCATTGGAGGCTTGAGCTGGGATACAAGC
AAGAAAGATCTGACTGAGTATTTGTCTCGATTTGGAGAAGTTGTAGACTGCACAATTAAAACAGATCCAGTCACTGGAAG
ATCAAGAGGATTTGGATTTGTGCTTTTCAAAGATGCTGCTAGTGTTGATAAGGTTTTGGAACTGAAGGAACACAAACTGG
ATGGCAAATTGATAGACCCCAAAAGGGCGAAGGCATTAAAAGGGAAAGAACCCCCAAAAAAGGTCTTTGTAGGTGGTTTG
AGCCCAGATACTTCTGAAGAACAAATAAAAGAATATTTTGGAGCATTCGGAGAGATTGAAAACATTGAACTTCCTATGGA
TACAAAAACAAATGAAAGAAGAGGCTTTTGTTTTATCACATATACAGATGAAGAGCCAGTAAAGAAATTATTAGAGAGCA
GATACCATCAGATTGGTTCTGGGAAGTGTGAAATCAAAGTTGCACAACCCAAAGAAGTATATAGGCAGCAACAGCAACAA
CAGAAAGGAGGGAGAGGGGCTGCAGCTGGTGGACGAGGTGGTACTAGGGGTCGTGGACGAGGTCAGGGCCAAAACTGGAA
CCAAGGATTTAATAACTATTATGATCAAGGATATGGAAATTACAATAGTACCTATGGTGGTGATCAAAACTATAGTGGCT
ATGGCGGATATGATTATACTGGGTATAACTATGGGAGCTATGGATATGGACAGGGATATGCAGACTACAGT

Library Parental gene expression (RPM)
SRP012922_ascending_colon 179 .88 RPM
SRP012922_cerebellum 209 .91 RPM
SRP012922_heart 63 .58 RPM
SRP012922_kidney 105 .41 RPM
SRP012922_liver 74 .15 RPM
SRP012922_lung 201 .14 RPM
SRP012922_quadricep_muscle 83 .77 RPM
SRP012922_spleen 176 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015197 possible_ortholog 1 retrogene
retro_cjac_2589,
Dasypus novemcinctus ENSDNOG00000009228 other_paralog 7 retrogenes
retro_dnov_1059, retro_dnov_1670, retro_dnov_1944, retro_dnov_2081, retro_dnov_250, retro_dnov_320, retro_dnov_374,
Dasypus novemcinctus ENSDNOG00000012928 within_species_paralog 1 retrogene
retro_dnov_1978,
Dasypus novemcinctus ENSDNOG00000019022 other_paralog 3 retrogenes
retro_dnov_540, retro_dnov_711, retro_dnov_959,
Felis catus ENSFCAG00000000455 possible_ortholog 1 retrogene
retro_fcat_1568,
Macropus eugenii ENSMEUG00000011454 possible_ortholog 7 retrogenes
retro_meug_1252, retro_meug_1378, retro_meug_1491, retro_meug_1971, retro_meug_2165, retro_meug_249, retro_meug_766,
Monodelphis domestica ENSMODG00000011916 ortholog_one2many 6 retrogenes
retro_mdom_1496, retro_mdom_1789, retro_mdom_1951, retro_mdom_2017, retro_mdom_546, retro_mdom_981,
Otolemur garnettii ENSOGAG00000002501 possible_ortholog 4 retrogenes
retro_ogar_2717, retro_ogar_2791, retro_ogar_437, retro_ogar_693,
Sarcophilus harrisii ENSSHAG00000013616 ortholog_one2one 3 retrogenes
retro_shar_297, retro_shar_527, retro_shar_625,
Ictidomys tridecemlineatus ENSSTOG00000013979 possible_ortholog 1 retrogene
retro_itri_1177,
Tupaia belangeri ENSTBEG00000002817 ortholog_one2one 7 retrogenes
retro_tbel_2079, retro_tbel_2283, retro_tbel_2608, retro_tbel_2874, retro_tbel_3344, retro_tbel_4302, retro_tbel_4405,
Tursiops truncatus ENSTTRG00000001793 possible_ortholog 2 retrogenes
retro_ttru_1486, retro_ttru_744,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_31 98.06 51.89
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2. retro_dnov_144 96.62 59.70
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3. retro_dnov_723 70.76 73.30
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4. retro_dnov_930 55.09 51.64
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5. retro_dnov_1175 74.51 75.82
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6. retro_dnov_1182 61.85 60.71
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7. retro_dnov_1603 68.97 71.79
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Download FASTA sequences of all ENSDNOG00000003887 retrocopies