Parental gene:

TCP1, ENSSTOG00000005572

Aliases:None
Description:t-complex 1 [Source:HGNC Symbol;Acc:11655]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393299.1:11273793..11282593(-)


>ENSSTOG00000005572
ATGGAGGGGCCTTTGTCCGTGTTTGGGGACCGCAGCACTGGGGAGGCCATCCGCTCCCAGAACGTTATGGCTGCAGCTTC
TATTGCCAATATCGTTAAGAGTTCTCTTGGTCCAGTTGGCTTGGATAAAATGTTGGTGGATGATATTGGTGATGTAACCA
TTACAAACGATGGTGCTACCATCCTGAAGTTACTGGAGGTAGAACATCCTGCTGCTAAAGTTCTTTGTGAGCTGGCTGAT
CTGCAGGACAAAGAAGTTGGAGATGGAACTACCTCAGTGGTTATTATTGCAGCAGAACTTCTGAAAAATGCAGATGAATT
GGTCAAACAGAAAATTCATCCCACATCAGTTATTAGTGGCTATCGACTTGCTTGCAAGGAAGCAGTGCGCTATATCAGTG
AAAACTTAATTATTAACACAGATGAACTTGGAAGAGATTGCCTGATTAATGCTGCTAAGACTTCCATGTCTTCCAAAATT
ATTGGAATAGATGGTGATTTCTTCTCTAATATGGTAGTAGATGCTGTACTTGCTATTAAATACACAGATATAAGAGGCCA
GCCTCGCTATCCTATCAATTCTGTTAATATTCTGAAAGCCCATGGGAGAAGTCAGATGGAGAGCATGCTGATCAGTGGCT
ATGCACTTAACTGTGTGGTGGGATCTCAGGGCATGCCCAAGAGAATAGTTAATGCAAAAATTGCTTGCCTTGACTTCAGC
CTACAGAAAACAAAAATGAAGCTTGGTGTACAAGTGATTATTACAGACCCTGAAAAATTGGACCAAATTAGACAGAGAGA
ATCAGATATCACCAAGGAGAGAATTCAGAAGATCCTGGCAACTGGTGCCAACGTTATTCTGACCACTGGTGGAATTGATG
ATATGTGTCTGAAGTACTTTGTGGAGGCTGGCGCCATGGCAGTTAGAAGAGTTTTGAAAAAGGATCTTAAGCGTATTGCT
AAAGCTTCTGGAGCAACTATTCTGTCAACCCTGGCCAATTTGGAAGGTGAAGAAACTTTTGAAGCTACAATGTTGGGACA
AGCAGAAGAAGTGGTCCAGGAGAGAATTTGTGATGATGAATTAATCTTAATCAAAAATACTAAGGCACGAACATCTGCAT
CGATTATTTTACGTGGAGCAAATGATTTCATGTGTGATGAGATGGAGCGCTCTTTACATGATGCTCTTTGTGTGGTGAAA
AGAGTTTTGGAGTCGAAATCTGTCGTTCCTGGTGGGGGTGCTGTAGAAGCAGCCCTTTCCATTTACCTTGAAAACTATGC
AACCAGCATGGGCTCTCGGGAACAGCTTGCTATTGCAGAGTTTGCAAGATCTCTTCTTGTTATTCCTAATACACTGGCAG
TTAATGCTGCCCAAGACTCCATAGATCTGGTTGCAAAGTTAAGAGCTTTTCATAATGAGGCTCAAGTTAATCCAGAACGT
AAAAATCTAAAATGGATTGGTCTTGATTTGATCAATGGTAAACCTCGAGACAACAAGCAAGCAGGAGTGTTTGAACCAAC
CATAGTTAAAGTGAAGAGCTTGAAATTTGCAACAGAAGCGGCAATTACCATTCTTCGGATTGATGACCTTATTAAATTAC
ACCCAGAAAGTAAAGATGATAAGCATGGAGGTTATGAAGATGCTGTTCACTCTGGAGCCCTTGATGACTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015405 ortholog_one2one 1 retrogene
retro_amel_828,
Callithrix jacchus ENSCJAG00000011792 ortholog_one2one 2 retrogenes
retro_cjac_1867, retro_cjac_2193,
Equus caballus ENSECAG00000017953 ortholog_one2one 1 retrogene
retro_ecab_798,
Homo sapiens ENSG00000120438 ortholog_one2one 1 retrogene
retro_hsap_3722,
Gorilla gorilla ENSGGOG00000014063 ortholog_one2one 1 retrogene
retro_ggor_2514,
Microcebus murinus ENSMICG00000007998 ortholog_one2one 1 retrogene
retro_mmur_795,
Macaca mulatta ENSMMUG00000012846 ortholog_one2many 1 retrogene
retro_mmul_1696,
Oryctolagus cuniculus ENSOCUG00000013847 ortholog_one2one 1 retrogene
retro_ocun_1577,
Pongo abelii ENSPPYG00000017146 ortholog_one2one 1 retrogene
retro_pabe_3135,
Pan troglodytes ENSPTRG00000018760 ortholog_one2one 1 retrogene
retro_ptro_2617,
Pteropus vampyrus ENSPVAG00000005316 ortholog_one2one 1 retrogene
retro_pvam_522,
Sorex araneus ENSSARG00000002463 ortholog_one2one 1 retrogene
retro_sara_624,
Sarcophilus harrisii ENSSHAG00000015128 ortholog_one2many 1 retrogene
retro_shar_830,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_1274 97.92 77.70
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Download FASTA sequences of all ENSSTOG00000005572 retrocopies