Parental gene: | AP3S2, ENSSSCG00000030174 |
| Aliases: | None |
| Description: | adaptor-related protein complex 3, sigma 2 subunit [Source:HGNC Symbol;Acc:571] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 7:60284223..60346605(-) |
>ENSSSCG00000030174
ATGATTCAGGCGATTCTGGTTTTCAATAACCACGGGAAACCGCGGCTGGTCCGCTTCTACCAGCGTTTCCCAGAAGAAAT
TCAACAGCAGATTGTTCGAGAGACCTTCCATTTGGTTCTCAAGCGGGATGACAACATCTGTAACTTCTTGGAGGGCGGAA
GTTTGATTGGTGGCTCTGACTACAAACTGATTTATCGGCACTATGCCACCCTCTACTTTGTATTTTGTGTGGATTCATCA
GAGAGCGAACTTGGGATCTTGGACCTCATCCAGGTTTTTGTGGAGACTCTGGATAAATGTTTCGAAAATGTTTGTGAATT
GGATTTGATCTTCCATATGGATAAGGTGCACTACATCCTTCAGGAGGTGGTGATGGGTGGAATGGTGTTGGAAACAAACA
TGAATGAAATCGTGGCTCAGATTGAAGCTCAAAACAAGCTGGAGAAATCGGAGGGTGGCCTTTCAGCAGCGCCTGCCCGG
GCCGTGTCTGCTGTGAAGAATATCAACCTGCCAGAGATGCCTCGGAACATCAACATTGGCGATCTCAACATCAAGGTCCC
TAACCTGTCCCAGTTTGTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 24 .82 RPM |
| SRP014902_testis | 31 .40 RPM |
| SRP018288_heart | 18 .96 RPM |
| SRP018288_kidney | 57 .53 RPM |
| SRP018288_liver | 34 .38 RPM |
| SRP018288_lung | 31 .77 RPM |
| SRP018856_adipose | 46 .77 RPM |
| SRP035408_brain | 30 .20 RPM |
| SRP035408_liver | 28 .62 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000001407 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000003359 | ortholog_one2one | 4 retrogenes | |
| Dipodomys ordii | ENSDORG00000004247 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000024044 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000028122 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000003421 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000019522 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000011780 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000030982 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000043141 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000015554 | ortholog_one2one | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000008668 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_199 | 77.54 | 70.98 | Please wait, loading  |
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| 2. | retro_sscr_268 | 79.55 | 68.39 | Please wait, loading |
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| 3. | retro_sscr_339 | 74.44 | 68.91 | Please wait, loading |
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| 4. | retro_sscr_620 | 69.06 | 92.75 | Please wait, loading |
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| 5. | retro_sscr_721 | 76.80 | 63.21 | Please wait, loading |
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| 6. | retro_sscr_753 | 66.47 | 86.53 | Please wait, loading |
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| 7. | retro_sscr_1109 | 74.44 | 68.91 | Please wait, loading |
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Download FASTA sequences of all ENSSSCG00000030174 retrocopies